Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G24
         (935 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.31 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    28   2.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   6.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.8  

>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +2

Query: 212 NMSVEASDSGKSDRKLYNSVISADYDDATKRCEQLQSEPNGSYIIKNTVTELLNNAESNT 391
           +++V A DS  S         + D+D   K  +  + EP G   + N    L  NA+ +T
Sbjct: 279 SVNVYAKDSNHSSASGNTKNKAKDWDSLAKLADLEEDEPTGEAALANLFQNLYKNADDDT 338

Query: 392 INFSYKLWT 418
                K +T
Sbjct: 339 RRAMMKSYT 347


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 742 PDPPPXXPPXXAPXQAPXPHAXXILIXPXXSPPXIVPXXXP 864
           P PPP  P   AP   P  +A      P  +PP + P   P
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +1

Query: 736  PHPDPPPXXPPXXAPXQAPXPHAXXILIXPXXSPPXIVPXXXPRXSAXP 882
            P P P    PP  AP  AP      +   P   P    P   P  +A P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +1

Query: 736  PHPDPPPXXPPXXAPXQAPXPHAXXILIXPXXSPPXIVPXXXPRXSAXP 882
            P P P    PP   P  AP      +   P  +P    P   P  +A P
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 13/49 (26%), Positives = 16/49 (32%)
 Frame = +1

Query: 736  PHPDPPPXXPPXXAPXQAPXPHAXXILIXPXXSPPXIVPXXXPRXSAXP 882
            P P P    PP   P +AP      + + P   P    P   P     P
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +1

Query: 736 PHPDPPPXXPPXXAPXQAPXPHAXXILIXPXXSPP 840
           P P PP    P  AP   P P    I+  P   PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 17  DLTIGNSLRFRLXLY-NLWT-EQTESDPNY 100
           D T+ NSLR+RL LY  L+T  Q   DP+Y
Sbjct: 517 DATLLNSLRYRLTLYIMLYTLSQISLDPSY 546


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 261 TIQSFPLTTMMQPKDASNFNPNRMVR 338
           T++  PL+ M + KD+S F  NR+++
Sbjct: 209 TVEPTPLSFMSEMKDSSQFYANRVMK 234


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 16/51 (31%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
 Frame = +1

Query: 724 PXXXPHPDPPPXXPPXXA-PXQAPXP--HAXXILIXPXXSPPXIVPXXXPR 867
           P   P P PPP  PP      Q P P  +   +       PP   P   PR
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPR 284


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 724 PXXXPHPDPPPXXPPXXAPXQAPXP 798
           P   P P PPP   P   P   P P
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,381
Number of Sequences: 5004
Number of extensions: 46196
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)