Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G24
         (935 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   9.2  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 406 VREINCVRFGIVKQLRNCVLYDVRTIRFGLKLLAS 302
           V  +NC+R   +  L+ C+L   +T      LLAS
Sbjct: 421 VNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLAS 455


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 406 VREINCVRFGIVKQLRNCVLYDVRTIRFGLKLLAS 302
           V  +NC+R   +  L+ C+L   +T      LLAS
Sbjct: 459 VNSVNCLRESFIGTLQRCLLSLEKTYERDTCLLAS 493


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 736 PHPDPPPXXPPXXAPXQAP 792
           P   PPP  PP   P Q P
Sbjct: 42  PSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = +1

Query: 724 PXXXPHPDPPPXXPPXXAPXQ 786
           P   P P  PP  PP   P Q
Sbjct: 42  PSQGPPPGGPPGAPPSQNPSQ 62


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 736 PHPDPPPXXPPXXAPXQA 789
           P P PPP  P    P  A
Sbjct: 339 PKPAPPPPPPSSSGPDSA 356


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 330 MVRTS*RTQLRSCLTMPNLTQLISLTNYGPT 422
           M+R   +T+LR  + +PN+T   S  +  PT
Sbjct: 347 MMRRPKKTRLRWMMEIPNVTLPTSTYSGSPT 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,213
Number of Sequences: 438
Number of extensions: 3419
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)