Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G23
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    89   1e-18
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    35   0.019
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    32   0.100
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.17 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.53 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    24   1.6  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    23   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.0  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 88.6 bits (210), Expect = 1e-18
 Identities = 37/54 (68%), Positives = 42/54 (77%)
 Frame = +2

Query: 134 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 295
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.7 bits (76), Expect = 0.019
 Identities = 17/49 (34%), Positives = 18/49 (36%)
 Frame = +1

Query: 766 PXPXXPXXPPXPLPXPPXXXXXXXXPPXXPGXPXKXPXXXXPPPXRPPP 912
           P    P   P P+P PP        PP  P  P        PPP  PPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPP--PPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 799 PLPXPPXXXXXXXXPPXXPGXPXKXPXXXXPPPXRPPP 912
           P P PP        P   P  P   P    PPP  PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIP-VPPPAPIMGGPPPPPPPP 768



 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/48 (29%), Positives = 14/48 (29%)
 Frame = +2

Query: 764 PPXPXXXXXXPPLXPXPPXXGXXXXXPPXXXXPPXKXPXXPXPPPXXP 907
           PP        P   P PP        PP    P       P PPP  P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 19/60 (31%), Positives = 19/60 (31%)
 Frame = +3

Query: 684 PPPPPPAXGXXXLFXXPXXPXXXPXXXPPXPXPXXXXXPSXXXPXGXXXXRLXPQXPXXP 863
           PPPPPPA            P   P   PP P P     P    P G       P  P  P
Sbjct: 732 PPPPPPA-------VIVPTPAPAPIPVPP-PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 32.3 bits (70), Expect = 0.100
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = -2

Query: 906 GXXGGGXGXXGXFXGGXXXXGGXXXXXPXXGGXGXRGGXXXXXXGXGG 763
           G  GG  G  G F GG    GG        G  G RGG        GG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGG 56



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 17/50 (34%), Positives = 17/50 (34%)
 Frame = -2

Query: 912 GXGXXGGGXGXXGXFXGGXXXXGGXXXXXPXXGGXGXRGGXXXXXXGXGG 763
           G G   GG G  G   GG    G         G  G RGG      G GG
Sbjct: 17  GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +1

Query: 766 PXPXXPXXPPXPLPXPPXXXXXXXXPPXXPGXPXKXPXXXXPPPXRPPPXXP 921
           P P     PP P   PP        PP  P  P K P      P   PP  P
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLP--PPAQPAAPVKSPPSAPSLPSAVPPMPP 199



 Score = 29.5 bits (63), Expect = 0.70
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +1

Query: 766 PXPXXPXXPPXPLPXPPXXXXXXXXPPXXPGXPXKXPXXXXPPPXRPPP 912
           P P      P  LP P         PP  P  P   P    PP   PPP
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP--PMPPKVPPPP 205


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/51 (31%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
 Frame = +1

Query: 772 PXXPXXPPXPLPXPPXXXXXXXXPPXXPGXPXKXPXXXXPPP-XRPPPXXP 921
           P  P   P   P PP        P   P  P   P    PPP   P P  P
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +3

Query: 684 PPPPPPAXGXXXLFXXPXXPXXXPXXXPPXPXPXXXXXP 800
           PPPPPP          P      P   PP   P     P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
 Frame = +2

Query: 773  PXXXXXXPPLXPX----PPXXGXXXXXPPXXXXPPXKXPXXPXPPPXXPXPXXP 922
            P      PP+ P     P         PP    PP   P  P  PP  P P  P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
 Frame = +1

Query: 766  PXPXXPXXPPXPLPXPPXXXXXXXXPPXXPGXPXKXPXXXXPP-PXRPPPXXP 921
            P    P  PP P+  PP        PP  P  P   P    PP P    P  P
Sbjct: 1700 PQMSAPTPPPPPMSVPP--------PPSAPPMPAGPPSAPPPPLPASSAPSVP 1744



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +3

Query: 669  PXXTXPPPPPPAXGXXXLFXXPXXPXXXPXXXPPXPXP 782
            P  + P PPPP          P  P   P   PP P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMP-AGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.8 bits (49), Expect(2) = 1.6
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +3

Query: 684 PPPPPPAXGXXXLFXXPXXPXXXP 755
           PPPPPP  G    F  P  P   P
Sbjct: 9   PPPPPPPPG----FEPPSQPPPPP 28



 Score = 22.6 bits (46), Expect(2) = 1.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 669 PXXTXPPPPPP 701
           P    PPPPPP
Sbjct: 5   PPGNPPPPPPP 15


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.6 bits (46), Expect(2) = 3.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 669  PXXTXPPPPPP 701
            P    PPPPPP
Sbjct: 1091 PSAVPPPPPPP 1101



 Score = 22.6 bits (46), Expect(2) = 3.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 684  PPPPPPA 704
            PPPPPPA
Sbjct: 1097 PPPPPPA 1103


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect(2) = 4.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 684 PPPPPPA 704
           PPPPPPA
Sbjct: 192 PPPPPPA 198



 Score = 22.2 bits (45), Expect(2) = 4.5
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +3

Query: 618 PXXFFFXPRXXXXXXFSPXXTXPPPPPP 701
           P   F  P         P    PPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPP 194


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 764  PPXPXXXXXXPPLXPXPPXXGXXXXXPPXXXXPPXKXPXXPXPPPXXPXPXXP 922
            PP P      PP+   P         PP    PP   P    PP   P    P
Sbjct: 1169 PPVPAPSSGIPPV---PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 764  PPXPXXXXXXPPLXPXPPXXGXXXXXPPXXXXPPXKXPXXPXPPPXXPXPXXP 922
            PP P      PP+   PP         P    PP   P    PP   P    P
Sbjct: 1198 PPVPKPSVGVPPV---PPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAP 1247



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/53 (28%), Positives = 16/53 (30%)
 Frame = +2

Query: 764  PPXPXXXXXXPPLXPXPPXXGXXXXXPPXXXXPPXKXPXXPXPPPXXPXPXXP 922
            PP P      PP+   P   G      P    PP   P    PP   P    P
Sbjct: 1140 PPVPKPSVAAPPV---PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,120
Number of Sequences: 5004
Number of extensions: 40935
Number of successful extensions: 240
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)