Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G23
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    27   0.32 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    27   0.32 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  DLLFFFSFKFAILKVYLICCSL 108
           DLLF   F + ++++Y+ CC L
Sbjct: 234 DLLFKREFSYYLIQIYIPCCML 255


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 43  DLLFFFSFKFAILKVYLICCSL 108
           DLLF   F + ++++Y+ CC L
Sbjct: 234 DLLFKREFSYYLIQIYIPCCML 255


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 684  PPPPPPAXGXXXL 722
            PPPPPP+ G   L
Sbjct: 1357 PPPPPPSSGQAYL 1369


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 SPSQIRTRISVMPILLQQAWLNPQVRFEH 246
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 SPSQIRTRISVMPILLQQAWLNPQVRFEH 246
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 SPSQIRTRISVMPILLQQAWLNPQVRFEH 246
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 150 SPDESSLKYEV-EFLLQQQWYDPRLRYSN 177


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 160 SPSQIRTRISVMPILLQQAWLNPQVRFEH 246
           SP +   +  V   LLQQ W +P++R+ +
Sbjct: 99  SPDESSLKYEV-EFLLQQQWYDPRLRYSN 126


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 666 SPXXTXPPPPPPA 704
           +P    PPPPPP+
Sbjct: 337 TPPKPAPPPPPPS 349



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +3

Query: 669 PXXTXPPPPPPAXG 710
           P    PPPPP + G
Sbjct: 339 PKPAPPPPPPSSSG 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,426
Number of Sequences: 438
Number of extensions: 5470
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)