Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G21
         (1137 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.41 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.94 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   1.6  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    24   2.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   3.8  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.0  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   6.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.41
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 1090 TPPPXXPPPPXPARGG 1137
            TPP   PPPP P+  G
Sbjct: 337  TPPKPAPPPPPPSSSG 352



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 1036 PPXPPPXPPXPXXXXP 1083
            PP P P PP P    P
Sbjct: 338  PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 1073 GXPXXPPPPXXXPPPP 1120
            G    PP P   PPPP
Sbjct: 333  GDSDTPPKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 882 PPXXPPPXPPPPXXPP 929
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 883 PPXXPPPXPPPPXXPP 930
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 5.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 886 PXXPPPXPPPPXXPPP 933
           P  P P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 1033 PPPXPPPXPP 1062
            P P PPP PP
Sbjct: 339  PKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 692 TPPXPPPPP 718
           TPP P PPP
Sbjct: 337 TPPKPAPPP 345



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 398 KXPPPPPPP 424
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +2

Query: 1040 PXPPXXPPPXXGXPXXPPPPXXXPPPPPPP 1129
            P P     P       PP P   PPP  PP
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 25.0 bits (52), Expect = 1.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 873 PPXPPXXPPPXPPPPXXP 926
           PP P   PPP  PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
 Frame = +1

Query: 1033 PPPXPPPXPPXPXXXXPX-PT--PPPXXPPPPXPAR 1131
            P P P   P  P    P  P+  PPP  PP   P++
Sbjct: 23   PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQ 58



 Score = 24.2 bits (50), Expect = 2.2
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +1

Query: 793 GPPGXXGGAPXPPPXXPXXRGPXXXXXXPXPPXXPPPXPPPPXXPPPXXXSP 948
           G PG    +P   P  P    P      P P    PP  PP   P     SP
Sbjct: 19  GAPGPQP-SPHQSPQAPQRGSPPNPSQGPPPGG--PPGAPPSQNPSQMMISP 67



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = +1

Query: 1036 PPXPPPXPPXPXXXXPXPTPPPXXPPPPXPAR 1131
            P  P    P      P P  PP  PP   P++
Sbjct: 31   PQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQ 62



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/31 (32%), Positives = 10/31 (32%)
 Frame = +1

Query: 1033 PPPXPPPXPPXPXXXXPXPTPPPXXPPPPXP 1125
            P P P P           P  P   PPP  P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect(2) = 1.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 1064 PXXGXPXXPPPP 1099
            P  G P  PPPP
Sbjct: 1852 PVSGSPEPPPPP 1863



 Score = 21.0 bits (42), Expect(2) = 1.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 1112 PPPPPP 1129
            PPPPPP
Sbjct: 1859 PPPPPP 1864


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 21/88 (23%), Positives = 21/88 (23%), Gaps = 3/88 (3%)
 Frame = +1

Query: 748  PPPPPTXXXXXXXXGGPPGXXGGAPXPPPXXPXXRGPXXXXXXPXPPXXPPPXPPPPXXP 927
            PP  PT           PG       P P  P  R          P    P   P P  P
Sbjct: 25   PPTRPTRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 84

Query: 928  PP---XXXSPPXXPXXXXXXXXXPPPPP 1002
             P       P   P          P PP
Sbjct: 85   HPRLRREAEPEAEPGNNRPVYIPQPRPP 112


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = -2

Query: 998 GGGGXXXXXXXXXGXXGGEXXXGGGXXGGGGXGG 897
           GG G         G  GG    G    GGGG  G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 11/32 (34%), Positives = 12/32 (37%)
 Frame = -2

Query: 1133 PRAGXGGGGXXGGGVGXGXXXXGXGGXGGGXG 1038
            P +   GG   G   G        GG GGG G
Sbjct: 22   PGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 404  PPPPPPP 424
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 1109 PPPPPPP 1129
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 404  PPPPPPP 424
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 1109 PPPPPPP 1129
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 695  PPXPPPPP 718
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 894  PPPXPPPP 917
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 895  PPPXPPPP 918
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 18/62 (29%), Positives = 18/62 (29%), Gaps = 5/62 (8%)
 Frame = +1

Query: 748 PPPPPTXXXXXXXXGGPPGXXGGA--PXPPPXXPXXRGPXXXXXXP---XPPXXPPPXPP 912
           PP  PT           PG       P P P  P  R        P    P   P P PP
Sbjct: 24  PPTRPTRLRREAKPEAEPGNNRPVYIPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 83

Query: 913 PP 918
            P
Sbjct: 84  HP 85


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 19/85 (22%), Positives = 19/85 (22%)
 Frame = +1

Query: 748  PPPPPTXXXXXXXXGGPPGXXGGAPXPPPXXPXXRGPXXXXXXPXPPXXPPPXPPPPXXP 927
            P PP             PG       P P  P  R          P    P   P P  P
Sbjct: 53   PRPPHPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPP 112

Query: 928  PPXXXSPPXXPXXXXXXXXXPPPPP 1002
             P     P            P P P
Sbjct: 113  HPRLRREPEAEPGNNRPVYIPQPRP 137



 Score = 22.6 bits (46), Expect = 6.6
 Identities = 19/75 (25%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
 Frame = +1

Query: 700 PXPXPPXX*XXFFXXPPPPPPTXXXXXXXXGGPPGXXGG-APXPPPXXPXXRG-PXXXXX 873
           P   P      +   P PP P           P        P P P  P  R  P     
Sbjct: 66  PKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPG 125

Query: 874 XPXPPXXPPPXPPPP 918
              P   P P PP P
Sbjct: 126 NNRPVYIPQPRPPHP 140



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +1

Query: 820 PXPPPXXPXXRG-PXXXXXXPXPPXXPPPXPPPP 918
           P P P  P  R  P        P   P P PP P
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/29 (34%), Positives = 10/29 (34%)
 Frame = +1

Query: 745 PPPPPPTXXXXXXXXGGPPGXXGGAPXPP 831
           PP PP            P    GG P PP
Sbjct: 107 PPIPPEIQRALEWNAAHPEEDDGGQPRPP 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 325,350
Number of Sequences: 438
Number of extensions: 18479
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 38439819
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)