Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_G18
(1201 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 36 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.026
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.045
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 0.61
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.97
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 5.2
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 27 6.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 9.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 36.3 bits (80), Expect = 0.008
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPPPP 1023
P PPP PPP PP PPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPP 27
Score = 35.5 bits (78), Expect(2) = 0.002
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPPPP 1023
P PPPP PP PPP PPPP
Sbjct: 11 PPPPPPGFEPPSQPPP--PPPP 30
Score = 34.3 bits (75), Expect = 0.034
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 964 PPPPXXPPPXXPPPXXPPPP 1023
PPPP PP PP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 30.7 bits (66), Expect = 0.42
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 949 GAXPRPPPPXXPPPXXPPPXXPPP 1020
G P PPPP P PP PPP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 0.97
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 970 PPXXPPPXXPPPXXPPP 1020
PP PPP PPP PP
Sbjct: 5 PPGNPPPPPPPPGFEPP 21
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 1124 PGXXXPPPPPPXXXRGGXXVFSXPPP 1201
PG PPPPPP G S PPP
Sbjct: 6 PGNPPPPPPPP-----GFEPPSQPPP 26
Score = 21.4 bits (43), Expect(2) = 0.002
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +1
Query: 868 PXGXXXPPPXPP 903
P G PPP PP
Sbjct: 5 PPGNPPPPPPPP 16
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.026
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 949 GAXPRPPPPXXPPPXXPPPXXPPPP 1023
G P PPPP PPP PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 30.7 bits (66), Expect = 0.42
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +2
Query: 1115 PPXPGXXXPPPPPPXXXRGGXXVFSXPPP 1201
PP P PPPPPP G PPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 28.7 bits (61), Expect = 1.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPPP 1020
P P PP P PPP PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 1115 PPXPGXXX-----PPPPPPXXXRGGXXVFSXPP 1198
PP PG PPPPPP GG ++ P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 26.2 bits (55), Expect = 9.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPPPP 1023
P PPP P P P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP 754
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.9 bits (74), Expect = 0.045
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 964 PPPPXXPPPXXPPPXXPPPP 1023
PPPP PP PP PPPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734
Score = 29.5 bits (63), Expect = 0.97
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPPPP 1023
P PPP PPP PP PP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP 1728
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPPPP 1023
P PPPP P PPP PP P
Sbjct: 1705 PTPPPPPMSVP--PPPSAPPMP 1724
Score = 27.5 bits (58), Expect = 3.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 964 PPPPXXPPPXXPPPXXPPPP 1023
PP P P PP PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPP 1718
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.9 bits (59), Expect(2) = 0.61
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +1
Query: 952 AXPRPPPPXXPPPXXPP 1002
A P P PP PPP PP
Sbjct: 232 ADPLPAPPPPPPPTLPP 248
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/51 (29%), Positives = 15/51 (29%), Gaps = 5/51 (9%)
Frame = +1
Query: 886 PPPXPPXXH-----TXXXXXXXXXXXGAXPRPPPPXXPPPXXPPPXXPPPP 1023
PPP PP P PP P P P PPPP
Sbjct: 192 PPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYTPKQADPLPAPPPPP 242
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPP 1017
P+ P PP PPP PP
Sbjct: 229 PKQADPLPAPPPPPPPTLPP 248
Score = 20.6 bits (41), Expect(2) = 0.61
Identities = 7/14 (50%), Positives = 7/14 (50%)
Frame = +1
Query: 982 PPPXXPPPXXPPPP 1023
PPP P P PP
Sbjct: 273 PPPPATPSQPPRPP 286
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.97
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 886 PPPXPPXXHTXXXXXXXXXXXGAXPRPPPPXXPPPXXPPP 1005
PPP PP + A P PPP P PP
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/50 (30%), Positives = 15/50 (30%)
Frame = +1
Query: 868 PXGXXXPPPXPPXXHTXXXXXXXXXXXGAXPRPPPPXXPPPXXPPPXXPP 1017
P G PP PP A P PP PPP P P
Sbjct: 440 PMGAPAAPPLPPS--APIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = +1
Query: 889 PPXPPXXHTXXXXXXXXXXXGAXPRPPPPXXPPPXXPPPXXPPPP 1023
PP PP + P P PP PP PP P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRP 274
Score = 26.2 bits (55), Expect = 9.0
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 889 PPXPPXXHTXXXXXXXXXXXGAXPRPPPPXXPPPXXPPPXXPPPP 1023
PP PP + G PPPP P P PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPP---PRSAPSTGRQPPP 378
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = -3
Query: 1022 GGGGXXGGGXXGGGXXGGGGRGXA 951
GG G GG GG G GGRG A
Sbjct: 30 GGRGGARGGGRGGARGGRGGRGGA 53
Score = 26.6 bits (56), Expect = 6.8
Identities = 15/26 (57%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Frame = -3
Query: 1022 GGGGXXGG-GXXGGGXXG-GGGRGXA 951
G GG GG G GG G GGGRG A
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGA 35
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +1
Query: 889 PPXPPXXHTXXXXXXXXXXXGAXPRPPPPXXPPPXXPPPXXPPPP 1023
PP PP G P PPP PP P PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSV---GVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 27.5 bits (58), Expect = 3.9
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 886 PPPXPPXXHTXXXXXXXXXXXGAXPRPPPPXXPPPXXPPPXXPPPP 1023
P PP GA P P P PP P PP P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 949 GAXPRPPPPXXPPPXXPPPXXPPPP 1023
G P P P PP PP PP P
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 949 GAXPRPPPPXXPPPXXPPPXXPPPP 1023
G P PPP PP P PP P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVP 1211
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 886 PPPXPPXXHTXXXXXXXXXXXGAXPRPPPPXXPPPXXPPPXXPPPP 1023
P PP GA P P P PP P PP P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -3
Query: 1019 GGGXXGGGXXGGGXXGGGGRG 957
GGG GG GG G GGRG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRG 466
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = +1
Query: 958 PRPPP-PXXPPPXXPPPXXPPPP 1023
PR PP P P P P P PP P
Sbjct: 104 PREPPLPNEPVPEEPLPGEPPLP 126
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 958 PRPPPPXXPPPXXPPPXXPPPP 1023
P PPPP PP P P PP
Sbjct: 3 PAPPPP--PPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,244
Number of Sequences: 5004
Number of extensions: 19755
Number of successful extensions: 301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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