Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G18
         (1201 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 964  PPPPXXPPPXXPPPXXPP 1017
            PP P   PP   PP  PP
Sbjct: 39   PPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
 Frame = +1

Query: 949  GAXPRPP--PPXXPPPXXPPPXXP 1014
            G+ P P   PP   PP  PP   P
Sbjct: 37   GSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 1118 PXPGXXXPPPPPP 1156
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
            channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 1115 PPXPGXXXPPPPPP 1156
            PP P    PPPPPP
Sbjct: 338  PPKPA---PPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,933
Number of Sequences: 438
Number of extensions: 4047
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40970340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)