Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G17
         (871 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    30   0.49 
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   2.6  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    27   2.6  
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    26   6.1  
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz...    26   6.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   8.0  
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo...    26   8.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = -2

Query: 399 PP*LVLSPXGPKTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQ 220
           PP    +P  P +L P A P +  +S        P+ P  PS+  P  PK  PPP+  + 
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSP-------PSAPSLPSAVPPMPPKVPPPPLSQAP 210

Query: 219 VTSRGCR 199
           V +   R
Sbjct: 211 VANTSSR 217


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 288 PKSPS-SFCPKVPKTLPPPICLSQVTS 211
           P SP  SF  +VP  +PPP+C   V S
Sbjct: 165 PISPDYSFPLRVPINIPPPLCTPSVVS 191


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +3

Query: 90  IQICFISSLQLWCVLTQKFTDLLITRKITRSAGNPQGDTLVTSLGTNKWGEARSL 254
           + I  +  + LW +  +KF D+ +  ++   AGN +G  L   LGT +   A+ L
Sbjct: 199 LDISDVCGMNLWDIQNEKF-DIRLLEEV---AGNSKGPDLANKLGTVEINGAKHL 249


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 333 LPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLSQVTSRGCRLEDCPLIE 175
           +P++  ++SL   A  + PSS  P    ++P     S VTS    L + PL E
Sbjct: 1   MPKAKKRVSLASKASSRLPSSGKPSQQASIPNVELSSTVTSNSQVLNNDPLKE 53


>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
           Mug22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 75  YNSK*IQICFISSLQLWCVLTQKFTDLL 158
           Y+ K +++  +S +  W VLTQ +TD L
Sbjct: 153 YHRKQMELQMLSFVAEWLVLTQHYTDAL 180


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 816  PXXXXXXPPPPPXXXPPP 869
            P      PPPPP   PPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPP 1717


>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -1

Query: 106 IKQICIHFELYQVSLLKTECQILRIP 29
           ++ ICIH   + +SL+  E +++R+P
Sbjct: 146 LEGICIHESKHMLSLITKENRVVRVP 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,231
Number of Sequences: 5004
Number of extensions: 57819
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)