Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_G17
(871 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF321609-1|AAT09768.1| 834|Homo sapiens titin protein. 34 0.77
S56138-1|AAA14245.1| 748|Homo sapiens choline acetyltransferase... 31 4.1
S45018-1|AAB23557.2| 559|Homo sapiens choline acetyltransferase... 31 4.1
BC130617-1|AAI30618.1| 630|Homo sapiens CHAT protein protein. 31 4.1
BC130615-1|AAI30616.1| 630|Homo sapiens CHAT protein protein. 31 4.1
AF305909-1|AAK08955.1| 630|Homo sapiens choline acetyltransfera... 31 4.1
AF305908-1|AAK08954.1| 666|Homo sapiens choline acetyltransfera... 31 4.1
AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransfera... 31 4.1
AF305906-3|AAK08952.1| 630|Homo sapiens choline acetyltransfera... 31 4.1
AF305906-2|AAK08951.1| 666|Homo sapiens choline acetyltransfera... 31 4.1
AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransfera... 31 4.1
>AF321609-1|AAT09768.1| 834|Homo sapiens titin protein.
Length = 834
Score = 33.9 bits (74), Expect = 0.77
Identities = 28/101 (27%), Positives = 45/101 (44%)
Frame = -2
Query: 540 TIPPAEKWVFLXRSHTPEPDAVIPDLPPICLFRSIVACAXLFAQSRRPP*LVLSPXGPKT 361
T+P A K V L + P P++PP+ + A + + + P P P T
Sbjct: 620 TVPEAPKEVVLEKK-VPSTPPKKPEVPPV---KVPEAPKEVVPEKKVPVPPPKKPEVPPT 675
Query: 360 LVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPP 238
VP +P++++ + A P P S P+VP+ LPP
Sbjct: 676 KVP-----EVPKAAVPEKKVPEAIPPKPESPPPEVPEVLPP 711
>S56138-1|AAA14245.1| 748|Homo sapiens choline acetyltransferase
protein.
Length = 748
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 334 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 381
>S45018-1|AAB23557.2| 559|Homo sapiens choline acetyltransferase
protein.
Length = 559
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 224 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 271
>BC130617-1|AAI30618.1| 630|Homo sapiens CHAT protein protein.
Length = 630
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 216 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 263
>BC130615-1|AAI30616.1| 630|Homo sapiens CHAT protein protein.
Length = 630
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 216 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 263
>AF305909-1|AAK08955.1| 630|Homo sapiens choline acetyltransferase
isoform R protein.
Length = 630
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 216 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 263
>AF305908-1|AAK08954.1| 666|Homo sapiens choline acetyltransferase
isoform S protein.
Length = 666
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 252 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 299
>AF305907-1|AAK08953.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 334 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 381
>AF305906-3|AAK08952.1| 630|Homo sapiens choline acetyltransferase
isoform R protein.
Length = 630
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 216 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 263
>AF305906-2|AAK08951.1| 666|Homo sapiens choline acetyltransferase
isoform S protein.
Length = 666
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 252 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 299
>AF305906-1|AAK08950.1| 748|Homo sapiens choline acetyltransferase
isoform M protein.
Length = 748
Score = 31.5 bits (68), Expect = 4.1
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +3
Query: 165 RKITRSAGNPQGDT----LVTSLGTNKWGEARSLALWDKTMMDSLEKL 296
RKI + A N L+TS G ++W EAR++ + D T DSL+ +
Sbjct: 334 RKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 381
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,419,281
Number of Sequences: 237096
Number of extensions: 2534832
Number of successful extensions: 18088
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12953
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11048563978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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