Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G16
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.91 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 19/60 (31%), Positives = 22/60 (36%)
 Frame = +3

Query: 726 LGPLSASXLPWTPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
           L P +   LP +  P +P G      P PP   I   P   G P   P  P  P   P P
Sbjct: 423 LPPSAPPSLPPSAPPSLPMG-APAAPPLPPSAPIAP-PLPAGMPAAPPLPPAAPAPPPAP 480


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +3

Query: 726 LGPLSASXLPWT-PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFD-PXGPQKGP 899
           +G  SAS  P + P PP P          PPRP I   P +P      P   P  P   P
Sbjct: 115 IGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSI--PPPSPASAPPIPSKAPPIPSSLP 172

Query: 900 XP 905
            P
Sbjct: 173 PP 174


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 732 PLSASXLPWTPCPPVPSGWGXXGXPXPPRP 821
           P  A  +   P PP P G    G P PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,341
Number of Sequences: 5004
Number of extensions: 32561
Number of successful extensions: 82
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)