Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_G16
(905 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 33 0.28
AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen pro... 33 0.28
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.37
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.37
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 32 0.49
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 32 0.49
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 32 0.49
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 32 0.49
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 31 0.86
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 31 0.86
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 31 0.86
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 30 2.0
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 30 2.0
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 30 2.0
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 30 2.0
AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 30 2.0
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.5
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 3.5
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 29 3.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 3.5
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 3.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 3.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.5
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 3.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 4.6
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 4.6
U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protei... 29 4.6
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 29 4.6
AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen prot... 29 4.6
Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical pr... 29 6.0
AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen stru... 29 6.0
AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen stru... 29 6.0
Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical pr... 28 8.0
Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical pr... 28 8.0
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 28 8.0
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 33.1 bits (72), Expect = 0.28
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 699 PPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDP 878
PP L PL + P P PP+PS G P PP P++ P + P P
Sbjct: 470 PPPPGPPSSLLPLINTNAP--PPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPG 527
Query: 879 XGP 887
P
Sbjct: 528 MAP 530
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/70 (31%), Positives = 25/70 (35%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFD 875
PPP + + PLS P TP PP P G G P PP + P
Sbjct: 520 PPP--PPMPGMAPLSTGA-P-TPPPPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGG 575
Query: 876 PXGPQKGPXP 905
P P P P
Sbjct: 576 PPPPPPPPPP 585
>AC084197-24|AAM44390.1| 297|Caenorhabditis elegans Collagen
protein 112 protein.
Length = 297
Score = 33.1 bits (72), Expect = 0.28
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 765 CPPVPSG-WGXXGXPXPP-RPVIXXXPXTPGXPXEXPFDPXGP 887
C P P+G G G P P +P + P PG P + P DP P
Sbjct: 98 CLPGPAGPVGTPGKPGRPGKPGVAGLPGNPGRPPQAPCDPITP 140
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = +3
Query: 699 PPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPRPV-IXXXPXTPGXPXEXPFD 875
PP V + P TP PP P G P PP P P PG P P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 323
Query: 876 PXGP 887
GP
Sbjct: 324 RFGP 327
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPR-PVIXXXPXTPGXPXEXPF 872
PPP + P + P P PP W P P R P P P P F
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 325
Query: 873 DPXGPQKGPXP 905
P G P P
Sbjct: 326 GPPGMGGMPPP 336
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGX---PXPPRPVI-----XXXPXTPG 851
PPP GP +P P PP PS +G G P PP P + P P
Sbjct: 298 PPPPPPPGRTPGP---PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 354
Query: 852 XPXEXP--FDPXGPQKGPXP 905
P P + P P + P P
Sbjct: 355 YPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.37
Identities = 21/64 (32%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = +3
Query: 699 PPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPRPV-IXXXPXTPGXPXEXPFD 875
PP V + P TP PP P G P PP P P PG P P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPS 333
Query: 876 PXGP 887
GP
Sbjct: 334 RFGP 337
Score = 29.5 bits (63), Expect = 3.5
Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPR-PVIXXXPXTPGXPXEXPF 872
PPP + P + P P PP W P P R P P P P F
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRF 335
Query: 873 DPXGPQKGPXP 905
P G P P
Sbjct: 336 GPPGMGGMPPP 346
Score = 29.1 bits (62), Expect = 4.6
Identities = 25/80 (31%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGX---PXPPRPVI-----XXXPXTPG 851
PPP GP +P P PP PS +G G P PP P + P P
Sbjct: 308 PPPPPPPGRTPGP---PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPR 364
Query: 852 XPXEXP--FDPXGPQKGPXP 905
P P + P P + P P
Sbjct: 365 YPSAGPGMYPPPPPSRPPAP 384
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 753 PWTPCPPVPSGWGXXGXPXPPRPV-IXXXPXTPGXPXE--XPFDPXGPQKGPXP 905
P TP P P G G P PP P P +PG P + P +P GP+ P P
Sbjct: 139 PITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP-GPKGPPGP 191
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 777 PSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGP 887
PS G P PP P P PG P P P GP
Sbjct: 238 PSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGP 274
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 32.3 bits (70), Expect = 0.49
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 753 PWTPCPPVPSGWGXXGXPXPPRPV-IXXXPXTPGXPXE--XPFDPXGPQKGP 899
PW PCP G G P PP P P +PG P + P +P GP KGP
Sbjct: 144 PWKPCPQ-----GPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP-GP-KGP 188
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 753 PWTPCPPVPSGWGXXGXPXPPRPV-IXXXPXTPGXPXE--XPFDPXGPQKGPXP 905
P TP P P G G P PP P P +PG P + P +P GP+ P P
Sbjct: 139 PITPPPCKPCPQGPPGPPGPPGPPGDSGEPGSPGLPGQDAAPGEP-GPKGPPGP 191
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +3
Query: 738 SASXLPWTPCPPVP-SGWGXXGXPXPPRPVIXXXPXTP-GXPXEXPFDPXGPQKGPXP 905
+ S +P P PPVP + P PP P+ P G P P P G P P
Sbjct: 193 AGSSIPHAPPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPP 250
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +3
Query: 738 SASXLPWTPCPPVP-SGWGXXGXPXPPRPVIXXXPXTP-GXPXEXPFDPXGPQKGPXP 905
+ S +P P PPVP + P PP P+ P G P P P G P P
Sbjct: 179 AGSSIPHAPPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPP 236
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +3
Query: 738 SASXLPWTPCPPVP-SGWGXXGXPXPPRPVIXXXPXTP-GXPXEXPFDPXGPQKGPXP 905
+ S +P P PPVP + P PP P+ P G P P P G P P
Sbjct: 179 AGSSIPHAPPPPVPLTSNIPQAPPAPPPPIGGIAPVNAHGAPPPPPLPPVGAGAPPPP 236
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 753 PWTPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXP-FDPXGPQKGP 899
P P PP S G P PP P + P P P P PQ+ P
Sbjct: 122 PPPPPPPRKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRP 171
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/53 (37%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Frame = +3
Query: 759 TPCPPVPSGWGXXGXPXPP-RPVIXXXPXTP-----GXPXEXPFDPXGPQKGP 899
TPC P P G G P PP RP P P P P P GP+ P
Sbjct: 147 TPCKPCPGG--RPGPPGPPGRPGSDGQPGRPATGGGAAPRPGPPGPKGPRGAP 197
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Frame = +3
Query: 768 PPVPSGWGXXGXPXPPRPV-IXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P PSG G G P P P P PG P + G + GP P
Sbjct: 191 PAGPSGPGPAGPPGPAGPPGNDGQPGQPGGPGQDGASSAGGEAGPGP 237
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/63 (33%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +3
Query: 720 CXLGPLSASXLPWTPCPPV-PSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKG 896
C GP S P P P P G G P P P P TP P P G
Sbjct: 110 CLPGPAGPSGAPGKPGRPGRPGAGGLPGNPGRP-PAQPCHPITPPPCRPCPQGPPGAPGS 168
Query: 897 PXP 905
P P
Sbjct: 169 PGP 171
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 765 CPPVPSG-WGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGP 899
CPP P+G G G PP P TP E P P GP GP
Sbjct: 175 CPPGPAGPAGGPGPAGPPGPA-GADGNTPSGGGEGPAGPPGP-PGP 218
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/68 (32%), Positives = 26/68 (38%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFD 875
PPP + L + + +P P PP P G P PP P P G P P
Sbjct: 542 PPP--PPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPP---PPPMLGGPPPPPP-- 594
Query: 876 PXGPQKGP 899
P G GP
Sbjct: 595 PPGGLMGP 602
>AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein
109 protein.
Length = 291
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 753 PWTPCPPVPSG-WGXXGXPXPP-RPVIXXXPXTPGXPXEXPFDPXG 884
P PCPP P G G G P RP P +PG P P P G
Sbjct: 136 PCNPCPPGPPGPQGPTGNSGQPGRPGNPGRPGSPGTP--GPVGPNG 179
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = +3
Query: 732 PLSASXLPWTPCPPVPSGWGXXGXPXPP-RPVIXXXPXTPGXP--XEXPFDPXGPQKGPX 902
P A P TP P P G G P PP P TPG P P P GP+ P
Sbjct: 134 PPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSP-GPRGPPG 192
Query: 903 P 905
P
Sbjct: 193 P 193
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/44 (34%), Positives = 17/44 (38%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQK 893
P PP P G G P PP P P G + P GP +
Sbjct: 41 PPPPPPCGGGYEAPPPPPPPSYAGGPSYAGPSYAGSYGP-GPYR 83
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
PC P P G PP P P P P P P GP GP P
Sbjct: 146 PCQPCPGG--------PPGPAGPAGPPGPPGPDGNPGSPAGP-SGPGP 184
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
PC P P G PP P P P P P P GP GP P
Sbjct: 146 PCQPCPGG--------PPGPAGPAGPPGPPGPDGNPGSPAGP-SGPGP 184
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = +3
Query: 732 PLSASXLPWTPCPPVPSGWGXXGXPXPP-RPVIXXXPXTPGXP--XEXPFDPXGPQKGPX 902
P A P TP P P G G P PP P TPG P P P GP+ P
Sbjct: 129 PPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSP-GPRGPPG 187
Query: 903 P 905
P
Sbjct: 188 P 188
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/56 (30%), Positives = 21/56 (37%)
Frame = +3
Query: 738 SASXLPWTPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
S + P P PS PP + P P P + P P GPQ+ P P
Sbjct: 676 SETSTPGEPTSSTPSDTPAPSTSVPPPTSVQ--PPQPQQPPQGPPGPPGPQQHPGP 729
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +3
Query: 738 SASXLPWTPCPPVPSGWGXX-GXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
S++ P T PP P G G P PP P P T G P P P G P
Sbjct: 703 SSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 759
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPW--TPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXP 869
PPP GP P P PP P G G P PP P P P P P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 805
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P PP P G PP P P G P P P G P P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 762 PCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P PP P G G P PP P P P P F GP P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF-KGGPPPPPPP 790
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +3
Query: 738 SASXLPWTPCPPVPSGWGXX-GXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
S++ P T PP P G G P PP P P T G P P P G P
Sbjct: 703 SSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 759
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPW--TPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXP 869
PPP GP P P PP P G G P PP P P P P P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 805
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P PP P G PP P P G P P P G P P
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 774
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 762 PCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P PP P G G P PP P P P P F GP P P
Sbjct: 743 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF-KGGPPPPPPP 790
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
PC P P G PP P P P P P P GP GP P
Sbjct: 146 PCQPCPGG--------PPGPAGPAGPPGPPGPDGNPGSPAGP-SGPGP 184
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/61 (37%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Frame = +3
Query: 732 PLSASXLPWTPCPPVPSGWGXXGXPXPP-RPVIXXXPXTPGXP--XEXPFDPXGPQKGPX 902
P A P TP P P G G P PP P TPG P P P GP+ P
Sbjct: 129 PPVAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDAAPGSP-GPRGPPG 187
Query: 903 P 905
P
Sbjct: 188 P 188
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
PC P P G PP P P P P P P GP GP P
Sbjct: 146 PCQPCPGG--------PPGPAGPAGPPGPPGPDGNPGSPAGP-SGPGP 184
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +3
Query: 738 SASXLPWTPCPPVPSGWGXX-GXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
S++ P T PP P G G P PP P P T G P P P G P
Sbjct: 286 SSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPP 342
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPW--TPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXP 869
PPP GP P P PP P G G P PP P P P P P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLP 388
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +3
Query: 762 PCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P PP P G PP P P G P P P G P P
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPP 357
Score = 28.3 bits (60), Expect = 8.0
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 762 PCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P PP P G G P PP P P P P F GP P P
Sbjct: 326 PPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF-KGGPPPPPPP 373
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPRP 821
PPP + P+S++ P P PP P G G PP P
Sbjct: 612 PPPPPPQSFGMAPISSAAPP-PPPPPPPMGLPAVGAGAPPPP 652
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +3
Query: 696 PPPREXXVCXLGPLSASXLPWTPCPPVPSGWGXXGXPXPPRP 821
PPP + P+S++ P P PP P G G PP P
Sbjct: 438 PPPPPPQSFGMAPISSAAPP-PPPPPPPMGLPAVGAGAPPPP 478
>U53155-5|AAC48270.1| 303|Caenorhabditis elegans Collagen protein
43 protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 732 PLSASXLPWTPCPPVPSGWGXXGXPXPP-RPVIXXXPXTPGXP--XEXPFDPXGPQKGPX 902
P +A P TP P P G G P PP P TPG P P P GP+ P
Sbjct: 136 PPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLP-GPRGPPG 194
Query: 903 P 905
P
Sbjct: 195 P 195
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 29.1 bits (62), Expect = 4.6
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = +3
Query: 753 PWTPCPPVPSGWGXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGPXP 905
P P PP G G P PP P P G P P P GP + P
Sbjct: 257 PGPPGPPGQDGSGGAAQPGPPGP--PGPPGNDGQPG-GPGQPGGPGQDGGP 304
>AB072926-1|BAB69889.1| 303|Caenorhabditis elegans collagen
protein.
Length = 303
Score = 29.1 bits (62), Expect = 4.6
Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +3
Query: 732 PLSASXLPWTPCPPVPSGWGXXGXPXPP-RPVIXXXPXTPGXP--XEXPFDPXGPQKGPX 902
P +A P TP P P G G P PP P TPG P P P GP+ P
Sbjct: 136 PPTAPCEPTTPPPCKPCPQGPPGPPGPPGAPGDPGEAGTPGRPGTDATPGLP-GPRGPPG 194
Query: 903 P 905
P
Sbjct: 195 P 195
>Z68335-1|CAA92729.1| 299|Caenorhabditis elegans Hypothetical
protein C29F4.1 protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 753 PWTPCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGP 899
P P P+G G G P P P TPG P P P GPQ P
Sbjct: 183 PGNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAP--GPAGPAGPQGQP 230
>Z54238-5|CAA90997.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.6 protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 753 PWTPCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGP 899
P P P+G G G P P P TPG P P P GPQ P
Sbjct: 183 PGNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAP--GPAGPAGPQGPP 230
>Z54238-3|CAA90995.1| 299|Caenorhabditis elegans Hypothetical
protein T28C6.4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 753 PWTPCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGP 899
P P P+G G G P P P TPG P P P GPQ P
Sbjct: 183 PGNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAP--GPAGPAGPQGPP 230
>AY347576-1|AAP97870.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-3) protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 753 PWTPCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGP 899
P P P+G G G P P P TPG P P P GPQ P
Sbjct: 183 PGNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAP--GPAGPAGPQGPP 230
>AY347574-1|AAP97868.1| 299|Caenorhabditis elegans COLlagen
structural gene, probablecuticle component, from embryo
to adult (28.7 kD) (col-117) protein.
Length = 299
Score = 28.7 bits (61), Expect = 6.0
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +3
Query: 753 PWTPCPPVPSGW-GXXGXPXPPRPVIXXXPXTPGXPXEXPFDPXGPQKGP 899
P P P+G G G P P P TPG P P P GPQ P
Sbjct: 183 PGNKGPSGPNGNPGAPGAPGQPGQDAPSEPITPGAP--GPAGPAGPQGPP 230
>Z74042-8|CAA98525.1| 299|Caenorhabditis elegans Hypothetical
protein T11F9.9 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 765 CPPVPSG-WGXXGXPXPP-RPVIXXXPXTPGXPXEXPFDPXGP 887
C P +G G G P P +P P PG P + P DP P
Sbjct: 100 CLPGAAGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCDPITP 142
>Z74036-2|CAA98487.1| 266|Caenorhabditis elegans Hypothetical
protein F55C10.3 protein.
Length = 266
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 765 CPPVPSG-WGXXGXPXPP-RPVIXXXPXTPGXPXEXPFDPXGP 887
C P +G G G P P +P P PG P + P DP P
Sbjct: 67 CLPGAAGPAGTPGKPGRPGKPGAPGLPGNPGHPPQQPCDPITP 109
>Z74036-1|CAA98486.1| 299|Caenorhabditis elegans Hypothetical
protein F55C10.2 protein.
Length = 299
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = +3
Query: 765 CPPVPSG-WGXXGXPXPP-RPVIXXXPXTPGXPXEXPFDPXGP 887
C P +G G G P P +P P PG P + P DP P
Sbjct: 100 CLPGAAGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCDPITP 142
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 28.3 bits (60), Expect = 8.0
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Frame = +3
Query: 765 CPPVPSG-WGXXGXPXPP-RPVIXXXPXTPGXPXEXPFDPXGP 887
C P +G G G P P RP P PG P P DP P
Sbjct: 89 CLPGAAGPAGTPGKPGRPGRPGAAGLPGNPGRPPAQPCDPITP 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,984,019
Number of Sequences: 27780
Number of extensions: 227189
Number of successful extensions: 919
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -