Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G15
         (1057 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.068
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.21 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.21 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.27 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.63 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   4.0  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.068
 Identities = 14/33 (42%), Positives = 14/33 (42%)
 Frame = +1

Query: 334 PTPPXXARPXXXPPPPPPLFXXXXXPPPRXXPP 432
           P PP        PPPPPP       PPP   PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.5 bits (68), Expect = 0.21
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 340 PPXXARPXXXPPPPPPLFXXXXXPPPRXXPP 432
           PP        PPPPPP       PPP   PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.36
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = +3

Query: 81  PPSYLPXSXXPPPXPX---RPXXGGXXPXPPXXXXXXPXXXXAPPPPXXXPP 227
           PP+ +  +  P P P     P  GG  P PP      P    A PPP   PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP-----PPGVAGAGPPPPPPPP 782


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 370 PPPPPPLFXXXXXPPPRXXPPHXXRR 447
           PPPPPP F     PPP   P +  +R
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKR 36



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 334 PTPPXXARPXXXPPPPPP 387
           P PP    P   PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 334 PTPPXXARPXXXPPPPPP 387
           P PP    P   PPPPPP
Sbjct: 13  PPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = +3

Query: 102 SXXPPPXPXRPXXGGXXPXPPXXXXXXPXXXXAPPPPXXXP 224
           S  PPP P R    G  P PP      P     PPPP   P
Sbjct: 335 SLPPPPPPPRSNAAGSIPLPPQGRSAPP-----PPPPRSAP 370


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
 Frame = -3

Query: 1052 GXXRAGXXGGXGGXAXXPPXPXGRGAAGXXXGXG--GGGXXGEGG 924
            G    G  G  GG    PP P G G  G   G G   GG  G GG
Sbjct: 184  GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228



 Score = 29.5 bits (63), Expect = 0.83
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = -3

Query: 1052 GXXRAGXXGGXGGXAXXPPX-PXGRGAAGXXXGXGGGGXXGEGG 924
            G    G  GG GG    P     G G  G   G  GGG  G GG
Sbjct: 227  GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -1

Query: 163 GGXGXXPPXXGRXGXGGGXXXXGRXEGG 80
           GG G  PP  G  G  GG    G   GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGG 222


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 18/44 (40%), Positives = 18/44 (40%)
 Frame = -3

Query: 1052 GXXRAGXXGGXGGXAXXPPXPXGRGAAGXXXGXGGGGXXGEGGA 921
            G  R G  GG  G A       GRG  G   G  GG   G GGA
Sbjct: 29   GGGRGGARGGGRGGARG-----GRGGRGGARGGRGGSSGGRGGA 67



 Score = 28.7 bits (61), Expect = 1.5
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -3

Query: 470 GXXRGXXXRRXXWGGXCRGGGXXXXXKRGGGGGGXXXGRAXXGG 339
           G   G    R  + G   G G      RGGG GG   GR   GG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = -3

Query: 1037 GXXGGXGGXAXXPPXPXGRGAAGXXXGXGGGGXXGEGGA 921
            G  GG GG         GRG  G   G GGG   G GGA
Sbjct: 448  GSRGGRGGFG-------GRGGFGGRGGFGGGRGRGRGGA 479


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +1

Query: 340  PPXXARPXXXPPPPPPLFXXXXXPPPRXXPP 432
            PP  A     PP P P       PPP   PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/33 (39%), Positives = 13/33 (39%)
 Frame = +1

Query: 334  PTPPXXARPXXXPPPPPPLFXXXXXPPPRXXPP 432
            P PP    P   PP P P       PPP   PP
Sbjct: 1190 PVPP----PSEAPPVPKPSVGVPPVPPPSTAPP 1218


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.6 bits (46), Expect(2) = 4.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 358 PXXXPPPPPP 387
           P   PPPPPP
Sbjct: 942 PAFPPPPPPP 951



 Score = 22.6 bits (46), Expect(2) = 4.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 370 PPPPPPL 390
           PPPPPPL
Sbjct: 948 PPPPPPL 954


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 334 PTPPXXARPXXXPPPPPPLFXXXXXPPPRXXPP 432
           P P   A P   PP  P L       PP+  PP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,006
Number of Sequences: 5004
Number of extensions: 14772
Number of successful extensions: 244
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 555217708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)