Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G12
         (1260 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.32 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.32 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.32 
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   1.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   1.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   1.3  
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    29   6.9  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    29   6.9  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    29   9.2  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   9.2  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 33.5 bits (73), Expect = 0.32
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = -2

Query: 212 SPPKNPXPXXXPXLAXHXRPXXXX---SGXPPXXSHXPPPPXXXPP 84
           SPP  P P   P LA    P       S  PP     PPPP   PP
Sbjct: 236 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 281


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 33.5 bits (73), Expect = 0.32
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = -2

Query: 212 SPPKNPXPXXXPXLAXHXRPXXXX---SGXPPXXSHXPPPPXXXPP 84
           SPP  P P   P LA    P       S  PP     PPPP   PP
Sbjct: 257 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 302


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 33.5 bits (73), Expect = 0.32
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
 Frame = -2

Query: 212 SPPKNPXPXXXPXLAXHXRPXXXX---SGXPPXXSHXPPPPXXXPP 84
           SPP  P P   P LA    P       S  PP     PPPP   PP
Sbjct: 242 SPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPP 287


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -2

Query: 209 PPKNPXPXXXPXLAXHXRPXXXXSGXPPXXSHXPPPP 99
           PP  P P   P +     P     G PP     PPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -2

Query: 209 PPKNPXPXXXPXLAXHXRPXXXXSGXPPXXSHXPPPP 99
           PP  P P   P +     P     G PP     PPPP
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -2

Query: 209 PPKNPXPXXXPXLAXHXRPXXXXSGXPPXXSHXPPPP 99
           PP  P P   P +     P     G PP     PPPP
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = -3

Query: 211 PPXKTPXPXXXXSSXRIXVRXXXXVANPPXXXTXPPHXPPXPPVXTXRXPSXEP 50
           PP   P P        + V        PP   + PP  PP PP+ +   P   P
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEF-----TPPSTSSVPPPPPPLPPISSGAPPPPPP 813


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 15/54 (27%), Positives = 19/54 (35%)
 Frame = -3

Query: 211 PPXKTPXPXXXXSSXRIXVRXXXXVANPPXXXTXPPHXPPXPPVXTXRXPSXEP 50
           PP   P P        + V        PP   + PP  PP PP+ +   P   P
Sbjct: 765 PPPPPPPPPPHCEPTMVHVEF-----TPPSTSSVPPPPPPLPPISSGAPPPPPP 813


>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 20/77 (25%), Positives = 25/77 (32%)
 Frame = -2

Query: 314 PVXXSXPPPHXXXXXXX*PXERXXXXXXNTFXXXSPPKNPXPXXXPXLAXHXRPXXXXSG 135
           P   + PPP         P  +       ++   +PP  P P   P       P    S 
Sbjct: 429 PTRVAPPPPPSAP-----PTIKFPISTGTSYSSTTPPTTPKPAPPPPSRI---PNPSPSP 480

Query: 134 XPPXXSHXPPPPXXXPP 84
            P   S  PPPP   PP
Sbjct: 481 QPAEVSKSPPPPPPLPP 497


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 132 TPLXLXPPPPTXXXPPP 82
           TP  + PPPPT   PPP
Sbjct: 136 TPAGMYPPPPTGQYPPP 152


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = -3

Query: 211 PPXKTPXPXXXXSSXRIXVRXXXXVANPPXXXTXPPHXPPXPPVXT 74
           PP     P    ++  + +     + +PP     PP  PP PP  T
Sbjct: 327 PPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQT 372


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 15/48 (31%), Positives = 18/48 (37%)
 Frame = -2

Query: 227 TFXXXSPPKNPXPXXXPXLAXHXRPXXXXSGXPPXXSHXPPPPXXXPP 84
           ++   +PP  P P   P       P    S  P   S  PPPP   PP
Sbjct: 460 SYSSTTPPTTPKPAPPPPSRI---PNPSPSPQPAEVSKSPPPPPPLPP 504


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,502,905
Number of Sequences: 27780
Number of extensions: 113261
Number of successful extensions: 1271
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3505977888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)