Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G10
         (981 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    34   0.035
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.7  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.0  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   5.3  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.9 bits (74), Expect = 0.035
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +3

Query: 555  PXXXGXPXXXXXXPKXPPKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPAPP 710
            P     P      P  PP   P P + P      P  PPPP  P    P+ P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP-LPASSAPSVP 1744


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 20/52 (38%), Positives = 20/52 (38%)
 Frame = -3

Query: 709 GGAGXFFKGXXGGGGXFGXXPXQXGPVXGXGGXLGGXLGXXXXXXGXPXXXG 554
           GG G    G  GG G FG  P       G GG LGG  G      G P   G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPG------GFGGGLGGFGGGPGGFGGGPGGHG 269


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +3

Query: 573 PXXXXXXPKXPPKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPAPP 710
           P      P   P   P P   P   G  P  PPP        P PP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 603 PPKXPPXPXTGPXWXGXXPKXPPPP 677
           PP  PP P  G    G  P  PPPP
Sbjct: 761 PPPPPPPP--GVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 603 PPKXPPXPXTGPXWXGXXPKXPPPPXXPLKK 695
           PP  PP P   P +       PPPP   +KK
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = +3

Query: 594 PKXPPKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPAPPXXRG 722
           P  PP  PP P   P      P  PPPP    K+    P   G
Sbjct: 6   PGNPPPPPPPPGFEPP---SQPPPPPPPGYVKKRKNKTPAQSG 45


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
 Frame = +3

Query: 594 PKXPPKXPPXPXTGPXWXGXXPKXP---PPPXXPLKKXPAPP 710
           P  P   PP P + P      P  P   PPP  P     +PP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 657 PKXPPPPXXPLKKXPAPPXXRG 722
           P  PPP   P    PAPP   G
Sbjct: 5   PPPPPPAPAPAAAAPAPPLMTG 26



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 21/70 (30%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
 Frame = +3

Query: 510 PQRVXXPPKGXXGXXPXXXGXPXXXXXXPKXPPKXPPXPXT--GPXWXGXXPKXPP-PPX 680
           PQ    PP       P     P      P  P K PP P +   P       K PP  P 
Sbjct: 133 PQSELRPPTSAP---PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 681 XPLKKXPAPP 710
            P    P PP
Sbjct: 190 LPSAVPPMPP 199


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
 Frame = +3

Query: 594 PKXPPKXPPXPXTG----PXWXGXXP------KXPPPPXXP--LKKXPAPP 710
           P  PPK P  P  G    P   G  P      + PPPP  P  + + P PP
Sbjct: 105 PSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPP 155


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = +3

Query: 603 PPKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPA-PPXXRGA 725
           PP  PP             K PPPP  P ++    PP   G+
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGS 331



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +3

Query: 606 PKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPA 704
           P  PP P          P  PP P  P+   PA
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +3

Query: 594 PKXPPKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPAP 707
           P   P  PP P   P      P  P PP  P     AP
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/61 (26%), Positives = 16/61 (26%), Gaps = 1/61 (1%)
 Frame = +3

Query: 528 PPKGXXGXXPXXX-GXPXXXXXXPKXPPKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPA 704
           PP       P      P      P  PP  P  P          P  P  P  P    PA
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483

Query: 705 P 707
           P
Sbjct: 484 P 484


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
 Frame = +3

Query: 555 PXXXGXPXXXXXXPKXPPKXPPXPXTGPXWXGXXPKXPPPPXXP-LKKXPAPPXXRGAH 728
           P   G P         PP  PP     P      P  P  P  P +    APP   G++
Sbjct: 506 PPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAPGSY 564


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = +3

Query: 573 PXXXXXXPKXP-PKXPPXPXTGPXWXGXXPKXPPPPXXPLKKXPAP 707
           P      P+ P P+ PP P   P      P  PP P  P+ + P P
Sbjct: 92  PLLNELVPEEPLPREPPLPNE-PVPEEPLPGEPPLPDEPVPEEPLP 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,234,054
Number of Sequences: 5004
Number of extensions: 9920
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)