Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G09
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   5.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 772 PTTXPXX*PLPNPAXXXPLGXXPPXXPPP 858
           PT  P   P+P PA    +G  PP  PPP
Sbjct: 742 PTPAPAPIPVPPPAPI--MGGPPPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 16/49 (32%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = +2

Query: 716 APLXXPSKRATSXNXSPXX-PPXXPXXNPXPIRPSXXP*GPXXXPXXPP 859
           AP   P   A+  +  P   PP  P   P  + PS  P  P   P  PP
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 772  PTTXPXX*PLPNPAXXXPLGXXPPXXPPP 858
            PT  P    +P P    P+   PP  PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 189 FVLFIAAAVSADDEPVLARLLVSKQVLN 272
           F+LFI+ A+S    PVLAR+L    +L+
Sbjct: 159 FLLFISTAMSITAFPVLARILSELHLLH 186


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 319 NNVYFTSISIFSTKYXFSTCF 257
           N+  FTS+S+ S+KY F T F
Sbjct: 157 NDACFTSLSMKSSKYSFLTAF 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,655
Number of Sequences: 5004
Number of extensions: 45612
Number of successful extensions: 83
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)