Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G07
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   1.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   5.7  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   7.5  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 167 IRKGPNKVGFIGLLQPFSDAIKLFTK 244
           + KG   VGF G L PF D+I  F K
Sbjct: 587 VPKGFQLVGFYGTLGPFMDSIGFFIK 612


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 260 NFSNYFCYYFSPGFXIYFIIITL 328
           NF+NY  +YFS G+  Y I I +
Sbjct: 311 NFANYQDFYFSKGYNSYQIEIQM 333


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = +2

Query: 128 LTLLERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFTKERTYPNFSNYFCYYFSPG 298
           L++L+RK L  I +R G  K GF G        I  F K+  + N        FSPG
Sbjct: 46  LSVLQRKGLALINLRIGVVKTGFGG------KTIIDFEKDPAFSNGEELPANSFSPG 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,694
Number of Sequences: 5004
Number of extensions: 20022
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)