Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_G04
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    32   0.092
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   4.6  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   4.6  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    26   8.0  

>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 32.3 bits (70), Expect = 0.092
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -2

Query: 319 IPIAVSD--EIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSIDEPRFRSGRSGQNVNV 149
           IP+A++D  E+V+   DD + ++ +      N R+    G+S +EPR R   SG+ VNV
Sbjct: 238 IPLAMNDLFEMVENNSDDDTFQIRISYLEIYNERIRDLIGNSDEEPRIRENASGE-VNV 295


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 165 PLRPERKRGSSMLSPLPI 218
           PL+P+R RG   L PLP+
Sbjct: 144 PLKPKRGRGRPRLHPLPV 161


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +3

Query: 402 VLSESNVKIINKRDNLAIKLGAAADSDNDRIAYGDANDKSSENV 533
           +LS++  +I+N   +  +K G A+D D++    GD   +SSE++
Sbjct: 755 ILSDAQFRILNNLASTMLKDGKASDDDDN----GDWRPESSESL 794


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 236 LILLLEKQSSGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVK 373
           +IL LEK  +  +++  VNN I   +R++   A   +I +G+ IVK
Sbjct: 45  VILALEKVVTSKLLKPRVNNRIGSVDRHI-GIATTGFIPDGQHIVK 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,050,796
Number of Sequences: 5004
Number of extensions: 60337
Number of successful extensions: 170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)