Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_G04
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 1.6
11_06_0115 + 20288220-20288303,20289223-20289706,20290160-202903... 29 3.6
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 29 3.6
05_05_0226 + 23442971-23443857,23444209-23446324 29 4.8
02_04_0610 + 24335153-24337724,24337835-24338256 29 4.8
11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906 29 6.4
11_01_0130 - 1079515-1079685,1079847-1079961,1080237-1080328,108... 29 6.4
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779... 29 6.4
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799... 29 6.4
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987... 28 8.4
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626 28 8.4
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 415 ATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGKL 546
+ R S+R LPS+ R QI HTA P + AA A L
Sbjct: 2768 SAGRDSSRAAQLPSSDEPRNEQIKDSDHTAQPFSSAAPDQAKDL 2811
>11_06_0115 + 20288220-20288303,20289223-20289706,20290160-20290393,
20291811-20292770,20292931-20293404,20293406-20294664
Length = 1164
Score = 29.5 bits (63), Expect = 3.6
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 224 TAVSLILLLEKQSSGSI---IEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKHYFPGSV 394
T ++++LL + SGS +E + + D +RN WIG+ KE+V +V
Sbjct: 827 TGMAIVLLQNNRFSGSFPVFLERSTKLQLVDLSRNNFSGKLPTWIGDKKELVLLLLSHNV 886
Query: 395 *TGVI 409
+G+I
Sbjct: 887 FSGII 891
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 373 TLLPWFSLDRCYPRATSRSSTRETILPSNSVLRQ 474
TL PW+S +PRATS ST P RQ
Sbjct: 490 TLSPWWSPPSPHPRATSSPSTSPRCSPRAETARQ 523
>05_05_0226 + 23442971-23443857,23444209-23446324
Length = 1000
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 119 LAASAGLIDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 298
LA A + LD+ +++A + R + TTAD TAV+ + E +E+ V+
Sbjct: 31 LAQEAQSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRF 90
Query: 299 I 301
+
Sbjct: 91 L 91
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +2
Query: 140 IDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 298
+DL++N+L A + +DA+T TA+ ++ L E Q G +I +++ +L
Sbjct: 313 LDLELNMLEAKDTEGWKFLDALTNC---TALEVLALAENQLQG-VIPNSIGSL 361
>11_02_0085 - 8162346-8162942,8165568-8166100,8166180-8166906
Length = 618
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 204 IASTSLVSALVGADRMLMSKSIRPALAASTQVEKNTKNFILIP*AADTRGMFDQILRIPY 25
+ +L A+ G L + I A S V KN ++ + I ++ +FD++L IPY
Sbjct: 162 VGCNALHHAIRGGHDDLALELIAAEPALSRAVNKNNESPMFIAAMRNSADIFDRLLAIPY 221
Query: 24 S 22
S
Sbjct: 222 S 222
>11_01_0130 -
1079515-1079685,1079847-1079961,1080237-1080328,
1080435-1080520,1080957-1081056,1082180-1082210,
1082416-1082471
Length = 216
Score = 28.7 bits (61), Expect = 6.4
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 345 GSGRVRKSSNTTSLVQFRQVLSESNVKIINKR---DNLAIKLGAAADSDNDRIAYGDAND 515
GS V+ + S+ + E+N N R + LA +GA+AD D D + + D
Sbjct: 111 GSSAVKAIHQSVSIDDIENAIEEANEHTENMRQIQEALATPIGASADFDEDELE-AELED 169
Query: 516 KSSENVSWEV 545
E + E+
Sbjct: 170 LEEEELDHEL 179
>07_03_0265 +
15976331-15976645,15977575-15977784,15977869-15977916,
15978307-15978675,15978736-15978747,15978763-15978870,
15979156-15979493,15980313-15980430,15983247-15984107,
15984457-15984750
Length = 890
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 217 IGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGRQHA 113
+G GD DE R R+ +S + N+ V + AG +HA
Sbjct: 272 LGHGDQHDELRPRAIQSFKRRNIHVVRVSAGDEHA 306
>04_04_1020 +
30179214-30179285,30179597-30179671,30179839-30179947,
30180425-30180642,30180729-30181309,30181387-30182185
Length = 617
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 541 KLIPLWENNRVYFKIYSVRXHQYLKLGTGTDG 636
+LIP+W + VYF + +++ GT TDG
Sbjct: 387 RLIPIWLTSAVYFIANTQAQTTFVQQGTKTDG 418
>11_06_0249 +
21697863-21697923,21698119-21698128,21698160-21698766,
21699011-21699090,21699182-21699263,21699357-21699428,
21700128-21700406
Length = 396
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +1
Query: 367 RQTLLPWFSLDRCYPRATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGK 543
R T +P + RC RA R + + L + +I E+ +PTTR G+
Sbjct: 259 RTTTVPAGPVFRCTERAEKRREFYMKLEEKHQALEEEKIQLEAKLKLPTTRPKSPKLGR 317
>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
Length = 369
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 448 LPSNSVLRQTQITTESHTAMPTTRAARTSAGKLI 549
+PSN Q+Q+ T S A+P R AG++I
Sbjct: 212 VPSNIFTGQSQVPTHSGIALPAVLILRNCAGEVI 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,964,059
Number of Sequences: 37544
Number of extensions: 439144
Number of successful extensions: 1120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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