Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_G04
(866 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical... 38 0.012
AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical... 38 0.012
AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin bet... 38 0.012
AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin bet... 38 0.012
Z49067-1|CAA88849.2| 376|Caenorhabditis elegans Hypothetical pr... 33 0.35
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 28 9.9
Z50794-4|CAC35819.1| 396|Caenorhabditis elegans Hypothetical pr... 28 9.9
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis... 28 9.9
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 28 9.9
>AL023828-18|CAA19462.2| 742|Caenorhabditis elegans Hypothetical
protein Y17G7B.15b protein.
Length = 742
Score = 37.5 bits (83), Expect = 0.012
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Frame = -3
Query: 375 CLTISLPSPIHSL*ANSKTFLLPSLMRLLTVSSMML----PLDCFSSSRIRETAVL*SAV 208
C + P+ IH L A+S++ L MR L + + L +D S+S +T + S V
Sbjct: 257 CFELVTPTRIHLLQADSES-LCQDWMRALQRTILALHEGDSVDVASTSPRNKTTSMSSGV 315
Query: 207 VIASTSLVSALVGADRMLMSKSIRPALAASTQVEKNTKNFILIP*AADTRGMFDQILRIP 28
+ S + +S L A + +S+ AST NT + + + F+Q+ R+P
Sbjct: 316 TLTSANAISPLSNAMDVTKGRSVSDP--ASTYTSANTSSISTAAGFSSSTTAFEQVRRVP 373
Query: 27 YSE 19
+E
Sbjct: 374 GNE 376
>AL023828-17|CAA19463.2| 826|Caenorhabditis elegans Hypothetical
protein Y17G7B.15a protein.
Length = 826
Score = 37.5 bits (83), Expect = 0.012
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Frame = -3
Query: 375 CLTISLPSPIHSL*ANSKTFLLPSLMRLLTVSSMML----PLDCFSSSRIRETAVL*SAV 208
C + P+ IH L A+S++ L MR L + + L +D S+S +T + S V
Sbjct: 341 CFELVTPTRIHLLQADSES-LCQDWMRALQRTILALHEGDSVDVASTSPRNKTTSMSSGV 399
Query: 207 VIASTSLVSALVGADRMLMSKSIRPALAASTQVEKNTKNFILIP*AADTRGMFDQILRIP 28
+ S + +S L A + +S+ AST NT + + + F+Q+ R+P
Sbjct: 400 TLTSANAISPLSNAMDVTKGRSVSDP--ASTYTSANTSSISTAAGFSSSTTAFEQVRRVP 457
Query: 27 YSE 19
+E
Sbjct: 458 GNE 460
>AJ132699-1|CAA10735.1| 742|Caenorhabditis elegans centaurin beta
1B protein.
Length = 742
Score = 37.5 bits (83), Expect = 0.012
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Frame = -3
Query: 375 CLTISLPSPIHSL*ANSKTFLLPSLMRLLTVSSMML----PLDCFSSSRIRETAVL*SAV 208
C + P+ IH L A+S++ L MR L + + L +D S+S +T + S V
Sbjct: 257 CFELVTPTRIHLLQADSES-LCQDWMRALQRTILALHEGDSVDVASTSPRNKTTSMSSGV 315
Query: 207 VIASTSLVSALVGADRMLMSKSIRPALAASTQVEKNTKNFILIP*AADTRGMFDQILRIP 28
+ S + +S L A + +S+ AST NT + + + F+Q+ R+P
Sbjct: 316 TLTSANAISPLSNAMDVTKGRSVSDP--ASTYTSANTSSISTAAGFSSSTTAFEQVRRVP 373
Query: 27 YSE 19
+E
Sbjct: 374 GNE 376
>AJ132698-1|CAA10734.1| 826|Caenorhabditis elegans centaurin beta
1A protein.
Length = 826
Score = 37.5 bits (83), Expect = 0.012
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Frame = -3
Query: 375 CLTISLPSPIHSL*ANSKTFLLPSLMRLLTVSSMML----PLDCFSSSRIRETAVL*SAV 208
C + P+ IH L A+S++ L MR L + + L +D S+S +T + S V
Sbjct: 341 CFELVTPTRIHLLQADSES-LCQDWMRALQRTILALHEGDSVDVASTSPRNKTTSMSSGV 399
Query: 207 VIASTSLVSALVGADRMLMSKSIRPALAASTQVEKNTKNFILIP*AADTRGMFDQILRIP 28
+ S + +S L A + +S+ AST NT + + + F+Q+ R+P
Sbjct: 400 TLTSANAISPLSNAMDVTKGRSVSDP--ASTYTSANTSSISTAAGFSSSTTAFEQVRRVP 457
Query: 27 YSE 19
+E
Sbjct: 458 GNE 460
>Z49067-1|CAA88849.2| 376|Caenorhabditis elegans Hypothetical
protein C44F1.2 protein.
Length = 376
Score = 32.7 bits (71), Expect = 0.35
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = -2
Query: 241 NQRNSRVVIGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGRQHAGREKHQKLHLDSLGS 68
N+R+ V+ SGD EP +S SGQ + K G GR AG++ KL ++ + S
Sbjct: 174 NKRHLEDVLASGDDASEPTEQS--SGQISEEPIKKRGRGRP-AGKKNKAKLEINFVES 228
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = -2
Query: 370 DDFLTLPD--PQFVGEL*NIPIAVSDEIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSI 197
DD LT P P F G+ P + D I + ++A ++ + + ++ +G GDS
Sbjct: 1319 DDNLTTPTQLPYFEGDF--WPNVIEDCIREASNEEAQRKVKEDDDDGEDADGGLGGGDSG 1376
Query: 196 DEPRFRSGRSGQNVNVQVNKTGAGRQHAGREKHQKLH 86
+ ++ ++ N ++NK AG G E KL+
Sbjct: 1377 KKKSSKNKKNNLKKNAKMNKKKAG-SITGNEVADKLY 1412
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = -2
Query: 370 DDFLTLPD--PQFVGEL*NIPIAVSDEIVDGILDDASTRLFLEQQNQRNSRVVIGSGDSI 197
DD LT P P F G+ P + D I + ++A ++ + + ++ +G GDS
Sbjct: 1308 DDNLTTPTQLPYFEGDF--WPNVIEDCIREASNEEAQRKVKEDDDDGEDADGGLGGGDSG 1365
Query: 196 DEPRFRSGRSGQNVNVQVNKTGAGRQHAGREKHQKLH 86
+ ++ ++ N ++NK AG G E KL+
Sbjct: 1366 KKKSSKNKKNNLKKNAKMNKKKAG-SITGNEVADKLY 1401
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 418 TSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSAGKLIP 552
T+ ++ T S + + T ITT + T PTT A T P
Sbjct: 314 TTTTAPTTTTTASTTTFKTTTITTTTQTTTPTTTATTTKPTTTTP 358
>Z50794-4|CAC35819.1| 396|Caenorhabditis elegans Hypothetical
protein F59F5.8 protein.
Length = 396
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +2
Query: 119 LAASAGLIDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSIIEDTVNNL 298
L ++ GLI +N++SA LV + +++ NT + + L KQ I +N
Sbjct: 56 LRSTTGLIPYYVNVISATVFKNMTLVCLVESSE-NTLIRYLYLFSKQLDQLRISQDLNRD 114
Query: 299 IRDGNRNV 322
+++ + +
Sbjct: 115 LKEVRKTI 122
>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
transmembrane conductanceregulator homolog protein 1
protein.
Length = 1247
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 263 SGSIIEDTVNNLIRDGNRNVLEFAYKLWIGEGKEIVKH 376
S ++++ + +L+ + RN L+ + +WIGE V+H
Sbjct: 1173 STKMMKEPIKSLVNEAIRNSLKQSTTIWIGEDFSDVEH 1210
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 187 RFRSGRSGQNVNVQVNKTGAGRQHAGREKHQKLHLDS 77
+F GR N + ++ R G EK++ L LDS
Sbjct: 26 KFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDS 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,204,683
Number of Sequences: 27780
Number of extensions: 349665
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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