Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_G02
(819 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.5
01_03_0005 + 11568545-11569119,11569179-11569191 31 1.5
11_01_0385 + 2915532-2916482 30 1.9
05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420 29 3.4
08_01_0059 - 394001-394708 29 4.4
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 29 4.4
11_04_0415 - 17395988-17396161,17397349-17397444,17397489-173980... 29 5.9
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.9
03_05_0252 - 22403504-22404676 28 7.8
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 28 7.8
03_02_0436 + 8427018-8427707,8429005-8429544 28 7.8
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 234 PPPXXXFFFXGGPXXPPXXGGGXXPPXXP 148
PPP GGP PP GG PP P
Sbjct: 365 PPPPPPGGKKGGPPPPPPKGGASRPPAAP 393
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 609 GGGXRXXXGGGXXTPXPXGGGGXRG 535
GGG GGG P P GGGG G
Sbjct: 100 GGGGSSTGGGGIYYPPPTGGGGGGG 124
>11_01_0385 + 2915532-2916482
Length = 316
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 559 GGRGXXPXPAXAAXPPPHXTRPXXXRRXPPXPP 657
GG P P + PPP P + PP PP
Sbjct: 218 GGNKWPPLPPFPSHPPPTPAWPQPGNKWPPLPP 250
>05_07_0102 + 27700395-27700426,27701034-27702087,27703205-27703420
Length = 433
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = -1
Query: 618 GXVGGGXRXXXGGGXXTPXPXGGGGXRGXXS 526
G GGG R GGG P GGGG RG S
Sbjct: 26 GCGGGGPRSGGGGG---PRGGGGGGPRGSGS 53
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -1
Query: 618 GXVGGGXRXXXGGGXXTPXPXGGGGXRG 535
G GGG R GGG P GGGG RG
Sbjct: 18 GGGGGGPRGCGGGG---PRSGGGGGPRG 42
>08_01_0059 - 394001-394708
Length = 235
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 577 PXPAXAAXPPPHXTRPXXXRRXPPXP 654
P P PPP T P RR PP P
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPP 28
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = +1
Query: 577 PXPAXAAXPPPHXTRPXXXRRXPPXPPRA 663
P P AA PPP P PP PP A
Sbjct: 11 PSPVAAAPPPPPVQVPVPPPPPPPLPPAA 39
>11_04_0415 -
17395988-17396161,17397349-17397444,17397489-17398026,
17398106-17398422
Length = 374
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/28 (53%), Positives = 15/28 (53%)
Frame = -1
Query: 618 GXVGGGXRXXXGGGXXTPXPXGGGGXRG 535
G GGG R GGG P GGGG RG
Sbjct: 10 GGGGGGPRGFGGGG---PRGFGGGGPRG 34
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 158 GGXXPPPXXGGXXGPPKKKKXXXGGG 235
GG PP GG GPP GGG
Sbjct: 103 GGGARPPGGGGGGGPPSLPPGAGGGG 128
>03_05_0252 - 22403504-22404676
Length = 390
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 662 ARGGXGGXRRXXXGRVXWGGGXAAXAGXG 576
+RGG GG R GRV GGG A G G
Sbjct: 3 SRGGGGGGR---AGRVGGGGGGGAGGGGG 28
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 28.3 bits (60), Expect = 7.8
Identities = 19/57 (33%), Positives = 20/57 (35%)
Frame = +1
Query: 577 PXPAXAAXPPPHXTRPXXXRRXPPXPPRAXXARVFFXFLXXXXXXXXXXXTXPPPPP 747
P PA A PP +P R P PR AR T PPPPP
Sbjct: 14 PAPAPAPPPPNLKPKPAPTTRGPCPSPRTLVARA---------APRRDDSTAPPPPP 61
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +3
Query: 279 GXXGXPXPFFFLXPPXPXXKTNPPP 353
G G PFF L PP P PPP
Sbjct: 100 GGGGQQSPFFPLLPPLPPQPPPPPP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,255,054
Number of Sequences: 37544
Number of extensions: 260381
Number of successful extensions: 2367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2114
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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