Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F24
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.40 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   0.56 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    22   7.3  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    26   8.6  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   8.6  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +3

Query: 627 PPGPPPPLXXXXXTXXLXXXXKSXXXXXPPSPPPXNPXTXPXXPNPPIXXXXSPP 791
           PP PPPP         +     S     PP PPP         P PP      PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG--SSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 627 PPGPPPPLXXXXXTXXLXXXXKSXXXXXPPSPPPXNPXTXPXXPNP 764
           PP PPPP      +  L    +S     PP PPP +  +    P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRS----APPPPPPRSAPSTGRQPPP 378



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/66 (25%), Positives = 18/66 (27%)
 Frame = +1

Query: 718 PPPHXTPXXTXPXXTPQFXFXXLPLTVPRXXXXXPRXXFXXXSPXXXPXPXXXXLPAPXX 897
           P P   P    P   P      LP+  P      P        P   P        AP  
Sbjct: 418 PTPPSLPPSAPPSLPPSAP-PSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAP 476

Query: 898 PPXPPP 915
           PP P P
Sbjct: 477 PPAPAP 482


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect(2) = 0.56
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 711 PPSPPPXNPXTXPXXPNPP 767
           PP PP   P + P  P PP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 0.56
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 618 PXXPPGPPPP 647
           P  PP PPPP
Sbjct: 6   PGNPPPPPPP 15


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +3

Query: 282 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 386
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 401 LPTASTRERGRLEVRSALGTVHVICTVVDRFV 306
           +P  STR+R  + +R   G +H+IC   D  +
Sbjct: 763 IPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +1

Query: 844 SPXXXPXPXXXXLPAPXXPPXPPPP 918
           +P   P P     P    PP PPPP
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/47 (27%), Positives = 14/47 (29%)
 Frame = +3

Query: 627 PPGPPPPLXXXXXTXXLXXXXKSXXXXXPPSPPPXNPXTXPXXPNPP 767
           PP PPP +                     P PPP  P      P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = -2

Query: 787 GXKXXQIGGXGKXGXVXGXNGGGXGGXXXXXDFXXXXXXXVXXXXXSGGGGPGGXXG 617
           G +    GG G  G   G   GG GG                      GGGPGG  G
Sbjct: 214 GGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 22.2 bits (45), Expect(2) = 7.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 618 PXXPPGPPPP 647
           P  PP PPPP
Sbjct: 942 PAFPPPPPPP 951



 Score = 21.8 bits (44), Expect(2) = 7.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 627 PPGPPPPL 650
           PP PPPPL
Sbjct: 947 PPPPPPPL 954


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 198 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 332
           P P  A   + +   P +++ PY+ N   D+N NGN   P+   +Y
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSY 396


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 279 KDYNPNGNGYEPIDNGAYYVDRPQGRP 359
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,164
Number of Sequences: 5004
Number of extensions: 48211
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)