Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_F22
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 33 0.22
03_06_0471 + 34169562-34169892,34170121-34170347 31 0.89
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 2.7
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 29 3.6
02_04_0382 - 22501041-22501279,22501717-22501810 29 6.3
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 29 6.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.3
03_02_0390 + 8056006-8057502 28 8.3
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 33.5 bits (73), Expect = 0.22
Identities = 23/63 (36%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = +2
Query: 209 QPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPG 379
QP Y P + P V PP Y P +G P N + Y + P GRP P P G
Sbjct: 387 QPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYG 445
Query: 380 ARG 388
A G
Sbjct: 446 AGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 31.5 bits (68), Expect = 0.89
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = +2
Query: 230 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 379
Y P P PP Y P+ GY P GAY +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +2
Query: 191 PDPFFAQPTVGNGYEPI-DNRPYIVNPPKDY---NPNGNGYEPIDNGAYYVDRPQGRPYF 358
P P+ QP G Y P Y P ++ P Y P G Y +PQG+PY
Sbjct: 229 PQPYPPQPQ-GQTYPPQPQGETYQPQPQRETYPPQPQVQPYPPKPQGQPYPPQPQGQPY- 286
Query: 359 KPTPF 373
P P+
Sbjct: 287 PPQPY 291
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +1
Query: 700 FLAXXXPPPPGXTXFAXWGPXPVSPPHXXXXPXXSXXAXXXPXPPKXG 843
++ PPPPG WG PP+ P + P PP G
Sbjct: 419 YMGAPPPPPPGSYAPVPWGQ---PPPYASYPPPPPGSSMYNPPPPAPG 463
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +2
Query: 206 AQPTVGNGYEPIDNRPYIVNPPK----DYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 373
A+ T +G P ++ + PP D P+ + Y+P + YY D P Y+ P P
Sbjct: 28 AEQTHDDGDNPPESPDHEDPPPSPEYYDPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPS 86
Query: 374 PGARGG 391
P GG
Sbjct: 87 PYYGGG 92
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/42 (38%), Positives = 18/42 (42%)
Frame = +1
Query: 718 PPPPGXTXFAXWGPXPVSPPHXXXXPXXSXXAXXXPXPPKXG 843
PPPP A P PV+PP P A P PP+ G
Sbjct: 192 PPPPRNQAQADKAPIPVAPPGAAVPP-----AQPQPQPPQAG 228
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +1
Query: 718 PPPPGXTXFAXWGPXPVSPPHXXXXPXXSXXAXXXPXPP 834
PPPP A P P PP P + + P PP
Sbjct: 551 PPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPP 589
>03_02_0390 + 8056006-8057502
Length = 498
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +2
Query: 161 ENADSVVINDPDPFFAQPTVGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRP 340
++ D V + F A+PT N + + Y+ + +GNG + G + +
Sbjct: 289 DDGDEVNAKEQFEFVAEPTTANSKDCVGTHEYLAPELVSGSGHGNGVDWWAFGVFLYELV 348
Query: 341 QGRPYFK 361
GR FK
Sbjct: 349 YGRTPFK 355
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,788,154
Number of Sequences: 37544
Number of extensions: 455802
Number of successful extensions: 1076
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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