Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F16
         (931 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   1.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.4  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 791 GGGGGXGGXSXXPPXPP 741
           GGGGG G  +  PP  P
Sbjct: 524 GGGGGSGSGNNQPPGGP 540


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 649 GGGGGGGRXXFXXGGGGGGFXKK 581
           GGG GGGR      G GGG  KK
Sbjct: 92  GGGRGGGRD--GDRGDGGGEEKK 112



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
 Frame = -1

Query: 550 GGGXXXXXXGXXGGGGG-XXKXXFFXP 473
           GGG      G  G GGG   K  F+ P
Sbjct: 92  GGGRGGGRDGDRGDGGGEEKKREFYIP 118


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 630 PPPPPPP 650
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 785 PPXXXXPPPPXPPXPXPT 838
           PP    PP P PP   PT
Sbjct: 175 PPLPQVPPLPLPPIFPPT 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,408
Number of Sequences: 336
Number of extensions: 4607
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26065116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)