Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F16
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.32 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.9  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   6.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   9.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.32
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 782 PPPXXXXPPPPXPPXPXPTQN 844
           PP     PPP  PP   P+QN
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQN 59



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 755 GXXXNPPXPPPPXXXXPPPPXPPXPXPTQ 841
           G   NP   PPP     PP  PP   P+Q
Sbjct: 37  GSPPNPSQGPPPGG---PPGAPPSQNPSQ 62



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +3

Query: 771 PXXPPPPXXXXPPPPXPPXXXPP 839
           P    PP     PPP  P   PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 627  RPPPPPPP 650
            +PPPPPPP
Sbjct: 1354 QPPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 766  KPPXPPPPP 792
            +PP PPPPP
Sbjct: 1354 QPPPPPPPP 1362



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 630  PPPPPPP 650
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 803 PPPPXPPXPXPTQN 844
           PP P PP P P+ +
Sbjct: 338 PPKPAPPPPPPSSS 351



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 745 GXGGXXXKPPXPPPPP 792
           G      KP  PPPPP
Sbjct: 333 GDSDTPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +3

Query: 780 PPPPXXXXPPPPXPPXXXPPKTK 848
           PP P    PPPP P    P   K
Sbjct: 338 PPKPA---PPPPPPSSSGPDSAK 357


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 134 IIITLXLLYFGE 169
           ++ITL  LYFGE
Sbjct: 11  LVITLIFLYFGE 22


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 83  CGAFEGMYYNFKILKGIPLLV 21
           C  ++ +YYN   ++ IP+ V
Sbjct: 101 CNNYKKLYYNINYIEQIPIPV 121


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 83  CGAFEGMYYNFKILKGIPLLV 21
           C  ++ +YYN   ++ IP+ V
Sbjct: 101 CNNYKKLYYNINYIEQIPIPV 121


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -3

Query: 83  CGAFEGMYYNFKILKGIPLLV 21
           C  +  +YYN   ++ IP+ V
Sbjct: 101 CNNYRKLYYNINYIEQIPIPV 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 268,029
Number of Sequences: 438
Number of extensions: 12790
Number of successful extensions: 36
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)