Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_F15
(878 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 132 8e-32
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 130 2e-31
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz... 27 3.5
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 4.7
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 4.7
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 4.7
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 6.1
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.1
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 26 8.1
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 132 bits (318), Expect = 8e-32
Identities = 63/97 (64%), Positives = 74/97 (76%)
Frame = +1
Query: 148 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 327
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 328 ERERRDNYVPEVSALEHDIIEVXPDTKGYVEDAGLQQ 438
ERER+D YVPEVS LE D + V DTK ++ G Q
Sbjct: 77 ERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQ 113
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 130 bits (315), Expect = 2e-31
Identities = 63/94 (67%), Positives = 73/94 (77%)
Frame = +1
Query: 148 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 327
IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++ VRGIS KLQEE
Sbjct: 17 IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEE 76
Query: 328 ERERRDNYVPEVSALEHDIIEVXPDTKGYVEDAG 429
ERER+D YVPEVS LE D I V DTK ++ G
Sbjct: 77 ERERKDQYVPEVSELEKDKINVDQDTKDMLKALG 110
>SPAC1039.04 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = -1
Query: 236 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 126
RG+V + AIS+ ++ F+ S++++ + + FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 289 SQVRGISIKLQEEERERRDNYVPEV 363
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 274 RRLRHSQVRGISIKLQEEERERRDNYVPEVS 366
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/51 (29%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Frame = +1
Query: 529 PPPXXXXPXPPXXXXPXXKXPG-PXIXPLXRVNGXPXPDNXPFXEXXAPPP 678
PP P P P P P I P + P P P PPP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 26.2 bits (55), Expect = 6.1
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = -2
Query: 490 HHSHPWVAGCVSCQAINI 437
HH +PW+ C Q I I
Sbjct: 104 HHEYPWILSCSDDQTIRI 121
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = -2
Query: 649 GXYQGXGXH*PSXKGESXAPGTFXXGXXGXGXXGXGXXXGXXG 521
G + G G H G PG F G G G G G G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGG 253
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 411 SLGVGVYFDDVMFESRHFWDIVVTPLTLLFLKFDRD 304
+L VG+ DD+ +R+ ++ TP++ L DRD
Sbjct: 174 ALNVGIQLDDMGVFARNHVKVLGTPISTLKTSEDRD 209
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,734,006
Number of Sequences: 5004
Number of extensions: 47224
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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