Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F15
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   128   7e-30
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   1.4  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    30   2.5  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   3.3  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   7.7  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   7.7  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  128 bits (308), Expect = 7e-30
 Identities = 61/97 (62%), Positives = 75/97 (77%), Gaps = 3/97 (3%)
 Frame = +1

Query: 148 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 327
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 328 ERERRDNYVPEVSALEHD---IIEVXPDTKGYVEDAG 429
           ERERRDNY+PE+S ++      I+V  DT   ++ AG
Sbjct: 77  ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAG 113


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +2

Query: 230 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 367
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 344 TTMSQKCLL-SNMTSSKXTPTPRDMLKMLDFNNINGLATNTASYPG 478
           + + + CL   +  SS  + TP D   +LD + +  LAT+ AS+ G
Sbjct: 53  SNLEETCLEHDSRPSSASSITPADNTSLLDLSTVTALATDDASFVG 98


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/87 (24%), Positives = 42/87 (48%)
 Frame = +2

Query: 248 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSSKXTPTPRDMLKML 427
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S        ++K+ 
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS-------CLMKIS 274

Query: 428 DFNNINGLATNTASYPGVAMVAGVINK 508
             + I       ++   VA++A ++ K
Sbjct: 275 TIDEIKAALAGDSTEMDVAVLAALLEK 301


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 226 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 342
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 226 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 342
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,876,161
Number of Sequences: 27780
Number of extensions: 317342
Number of successful extensions: 864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)