Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_F12
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 29 3.8
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 29 3.8
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 29 3.8
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 29 5.0
04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798 29 5.0
11_03_0063 + 9515666-9516656,9517503-9518599 29 6.6
09_02_0181 - 5425833-5426527,5426667-5429397 29 6.6
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105... 29 6.6
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196 29 6.6
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 28 8.7
09_03_0007 - 11430123-11430513,11430605-11430794,11431114-114311... 28 8.7
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 28 8.7
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 3.8
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = -1
Query: 365 KTLVP*A*PVSLPRSSLKISLL*PAFPKSPSSFCPKVPKTLPPPICLS 222
K+L P A PVSLP +K SL P P +P S P V K+LPPP +S
Sbjct: 1262 KSLPPPA-PVSLPPPPVK-SL--P--PPAPVSLPPPVVKSLPPPAPVS 1303
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +1
Query: 193 SRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTG-QAYGTRVLG 369
SR H TW KQ GGK G G G G G R + TG Q YG V
Sbjct: 387 SRSHYIVQTWQKQF-GGKGAGGQGGGQPGYEGGTGQQR--YGVGAPPPTGQQGYGGGVPP 443
Query: 370 P--GGDSTNYGG 399
P G T +GG
Sbjct: 444 PTCSGGHTGFGG 455
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 29.5 bits (63), Expect = 3.8
Identities = 27/72 (37%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +1
Query: 193 SRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTG-QAYGTRVLG 369
SR H TW KQ GGK G G G G G R + TG Q YG V
Sbjct: 387 SRSHYIVQTWQKQF-GGKGAGGQGGGQPGYEGGTGQQR--YGVGAPPPTGQQGYGGGVPP 443
Query: 370 P--GGDSTNYGG 399
P G T +GG
Sbjct: 444 PTCSGGHTGFGG 455
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 382 STNYGGRLDWANKNAQATIDLNRQI 456
S+ +GG L W N + ++T+D +RQ+
Sbjct: 960 SSLHGGSLPWKNTDFESTVDFDRQL 984
>04_03_0646 + 18363847-18364858,18365501-18365578,18366161-18366798
Length = 575
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 34 LKILTFGLEER-NLIQLKMNTNLFYIFATTLVCVNAEVYGPSDYAE 168
L+ L EER N +L N +++YI + + C+ + + P+ Y +
Sbjct: 469 LEALNLECEERINEYELSENIDIYYISNSNIECIGLQAFAPNWYRD 514
>11_03_0063 + 9515666-9516656,9517503-9518599
Length = 695
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 34 LKILTFGLEER-NLIQLKMNTNLFYIFATTLVCVNAEVYGPSDYAE 168
L+ L EER N +L N +++YI + + C+ + + P+ Y +
Sbjct: 485 LEALNLESEERINEYELSENIDIYYISNSNIECIGLQAFAPNWYRD 530
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = +1
Query: 187 QSSRRHPRDVTWDKQMGGGKVFGTLGQN-DDGLFGKAGYNREIFNDDRGKLTGQAYGTRV 363
QS RR + W K++GG + +N DDG G + G + T
Sbjct: 959 QSRRRAEKAAAWPKRLGGTGPCASRTENADDGAAGGGDGGSTWGGGSGAPMAGSGFPTHG 1018
Query: 364 LGPGGDSTNYGG 399
G G+ + GG
Sbjct: 1019 SGRRGERRDGGG 1030
>09_01_0073 -
1057560-1058043,1058199-1058385,1058754-1059062,
1059427-1060269,1061572-1062552,1063189-1063516
Length = 1043
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 34 LKILTFGLEER-NLIQLKMNTNLFYIFATTLVCVNAEVYGPSDYAE 168
L+ L EER N +L N +++YI + + C+ + + P+ Y +
Sbjct: 542 LEALNLESEERINEYELSENIDIYYISNSNIECIGLQAFAPNWYRD 587
>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
Length = 933
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 34 LKILTFGLEER-NLIQLKMNTNLFYIFATTLVCVNAEVYGPSDYAE 168
L+ L EER N +L N +++YI + + C+ + + P+ Y +
Sbjct: 259 LEALNLESEERINEYELSENIDIYYISNSNIECIGLQAFAPNWYRD 304
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 28.3 bits (60), Expect = 8.7
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 235 GGGKVFG-TLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDS-TNYGGRLD 408
G G G T+G +DDG K + + + G+ G A G R G GG N+G R D
Sbjct: 177 GAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNFGERKD 236
Query: 409 WANK 420
+K
Sbjct: 237 PPHK 240
>09_03_0007 -
11430123-11430513,11430605-11430794,11431114-11431182,
11431601-11431727,11431843-11432083,11432519-11432596,
11433004-11433109,11433560-11433625,11437021-11437043,
11438106-11438177,11438256-11438394,11439505-11439919
Length = 638
Score = 28.3 bits (60), Expect = 8.7
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Frame = +1
Query: 151 PSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRG 330
PS +A D I +S PR ++ D + + G + N L N + N G
Sbjct: 162 PSQFAWDGVICRNTSDNIPRIISLD--LSNSNLHGVISNNFTLLTALENLNNFVPNIAVG 219
Query: 331 KLTGQ---AYGTRVLGPGGDSTNYGGRLDW 411
K+ + G GGDS N +LDW
Sbjct: 220 KVKKDDMVSKGEVKKVKGGDSQNLDEKLDW 249
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 504 WIRTPTFLPV---VWSRRSSVTKDQTSVFKQRSAMIGDHLNXL 623
W+RT L V V S VT+D SVF QR+ ++G HL+ +
Sbjct: 660 WMRTCGLLDVKLEVQGESSLVTRD--SVFGQRAELLGRHLSEI 700
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,063,834
Number of Sequences: 37544
Number of extensions: 510301
Number of successful extensions: 1430
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -