Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F11
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.008
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.72 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    27   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 31/143 (21%), Positives = 36/143 (25%), Gaps = 1/143 (0%)
 Frame = +3

Query: 513 PXXTPPXXXXXGGXXPRXPKXXXXXXXNPPPXTPXXTXKXPPXXXGKXXXPPXTPXXXXX 692
           P   PP      G  P  P+        PP   P    + PP    +    P  P     
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396

Query: 693 FPXXPPXXFF*NFXKXXPPPFXXPPXXXXXPPFPXPPXKXKXKKKXXXXAXXSPXXXGXX 872
               P      N  +   PP   PP     PP   P             A  +P      
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPP---SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453

Query: 873 P-XPXNXXXXXGXPPXPXXXPXP 938
           P  P         PP P   P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAP 476


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 746 PPXXFXPPXXXXPPLSXPPXXXKXKKKKXPXXXG 847
           PP  F PP    PP   PP   K +K K P   G
Sbjct: 14  PPPGFEPPSQPPPP--PPPGYVKKRKNKTPAQSG 45


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 20  TIGNS*DLRMPRADVLARAAPRHGPPPLGSCTRARSQLASHRNSSRL 160
           T+ N+  L++P+AD  A  + +  P   G   +    +  HRN   L
Sbjct: 544 TVENTEPLKVPQADDTAALSKKRKPGQEGDVFKKSKPIEQHRNREEL 590


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 26/114 (22%), Positives = 26/114 (22%)
 Frame = +3

Query: 597  PPPXTPXXTXKXPPXXXGKXXXPPXTPXXXXXFPXXPPXXFF*NFXKXXPPPFXXPPXXX 776
            PP   P  T   P    G    PP  P      P  P            PP     P   
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA-------PSGAPP----VPAPS 1089

Query: 777  XXPPFPXPPXKXKXKKKXXXXAXXSPXXXGXXPXPXNXXXXXGXPPXPXXXPXP 938
              PP P P        K        P   G  P P         P      P P
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,700
Number of Sequences: 5004
Number of extensions: 42627
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)