Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F10
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    33   0.041
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.072
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.17 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.29 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.5  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    28   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   2.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   6.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 21/72 (29%), Positives = 25/72 (34%)
 Frame = +1

Query: 664 PXPPPPPXPPXXPXXPXPPXXXXXXXXPGGXLSPXXGGXXXPPPXXNTPXXAXXXPXPPX 843
           P PPPPP        P PP        P    +P  G    PPP  ++   +     PP 
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG--RQPPPLSSSRAVSNPPAPPPA 394

Query: 844 TPXXXXXRXLPP 879
            P       LPP
Sbjct: 395 IPGRSAP-ALPP 405



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/76 (27%), Positives = 22/76 (28%)
 Frame = +1

Query: 661 PPXPPPPPXPPXXPXXPXPPXXXXXXXXPGGXLSPXXGGXXXPPPXXNTPXXAXXXPXPP 840
           PP P PP  PP  P  P  P        P    S   G    PP   + P         P
Sbjct: 415 PPVPTPPSLPPSAP--PSLP--------PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464

Query: 841 XTPXXXXXRXLPPXXP 888
             P        PP  P
Sbjct: 465 AAPPLPPAAPAPPPAP 480


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 13/22 (59%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
 Frame = +1

Query: 661 PPXPPPPP--XPPXXPXXPXPP 720
           PP PPPPP   PP  P  P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +1

Query: 661 PPXPPPPPXPP--XXPXXPXPP 720
           P  PPPPP PP    P  P PP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPP 27


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 277 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 170
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 19/57 (33%), Positives = 20/57 (35%)
 Frame = +1

Query: 679 PPXPPXXPXXPXPPXXXXXXXXPGGXLSPXXGGXXXPPPXXNTPXXAXXXPXPPXTP 849
           PP PP     P P         P    +P  GG   PPP    P  A   P PP  P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPP----APIMGGPPPPPP---PPGVAGAGPPPPPPP 781



 Score = 29.9 bits (64), Expect = 0.51
 Identities = 18/53 (33%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
 Frame = +1

Query: 661 PPXPPPP---PXPPXXPXXPXPPXXXXXXXXPGGXLSPXXGGXXXPPPXXNTP 810
           PP PPP    P P   P  P PP        P     P   G   PPP    P
Sbjct: 732 PPPPPPAVIVPTPAPAPI-PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +1

Query: 670 PPPPPXPPXXPXXPXPPXXXXXXXXPGG 753
           PPPPP P      P PP         GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect(2) = 1.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 661 PPXPPPPP 684
           PP PPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 23.4 bits (48), Expect(2) = 1.3
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 670 PPPPPXPP 693
           PPPPP PP
Sbjct: 307 PPPPPPPP 314


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 661  PPXPPPPPXPPXXPXXPXPP 720
            PP P  PP P   P  P PP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/30 (36%), Positives = 11/30 (36%)
 Frame = +1

Query: 661  PPXPPPPPXPPXXPXXPXPPXXXXXXXXPG 750
            P  PP P  PP  P  P P         PG
Sbjct: 1718 PSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 214 LKSFH-LGSGAALTAPRASTNAKTKLKIRTKFILPKFYSAGEFKIPIQYRSTRTLRMIKS 38
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I++
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 661 PPXPPPPPXPPXXPXXPXPP 720
           P  PPPPP P      P PP
Sbjct: 3   PAPPPPPPAPAPAAAAPAPP 22


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/63 (26%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
 Frame = +1

Query: 673  PPPPXPPXXPXXPXPPXXXXXXXXPGGXL----SPXXGGXXXPPPXXNTPXXAXXXPXPP 840
            PP P P   P  P P         P   +     P  G    PPP    P        PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209

Query: 841  XTP 849
              P
Sbjct: 1210 VPP 1212



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/76 (23%), Positives = 19/76 (25%)
 Frame = +1

Query: 661  PPXPPPPPXPPXXPXXPXPPXXXXXXXXPGGXLSPXXGGXXXPPPXXNTPXXAXXXPXPP 840
            P   PP P P   P  P P         P   + P        PP       A   P P 
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP-APSGAPPVPKPSVAAPPVPVPS 1137

Query: 841  XTPXXXXXRXLPPXXP 888
              P         P  P
Sbjct: 1138 GAPPVPKPSVAAPPVP 1153


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 2.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 670 PPPPPXPP 693
           PPPPP PP
Sbjct: 946 PPPPPPPP 953



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 661 PPXPPPPPXP 690
           P  PPPPP P
Sbjct: 905 PTPPPPPPLP 914


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/59 (28%), Positives = 19/59 (32%)
 Frame = +1

Query: 664 PXPPPPPXPPXXPXXPXPPXXXXXXXXPGGXLSPXXGGXXXPPPXXNTPXXAXXXPXPP 840
           P P PPP PP  P  P           P   ++        PPP    P      P PP
Sbjct: 234 PLPAPPPPPP--PTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPP----PATPSQPPRPP 286


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/74 (24%), Positives = 19/74 (25%), Gaps = 1/74 (1%)
 Frame = +1

Query: 661  PPXPPPPPXPPXXPXXPXPPXXXXXXXXPGGXLS-PXXGGXXXPPPXXNTPXXAXXXPXP 837
            PP PPP   P   P    P         P G  +     G   P P             P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLSSMP 1941

Query: 838  PXTPXXXXXRXLPP 879
               P       LPP
Sbjct: 1942 NAPPSVASNAKLPP 1955


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/67 (26%), Positives = 18/67 (26%), Gaps = 5/67 (7%)
 Frame = +1

Query: 664 PXPPPPPXPPXXPXXPXPPXXXXXXXXPGGXLSPXXGGXXXPPPXXNTP-----XXAXXX 828
           P PP  P  P  P  P PP        P     P        P     P       A   
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSV 634

Query: 829 PXPPXTP 849
           P PP  P
Sbjct: 635 PQPPAAP 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,411
Number of Sequences: 5004
Number of extensions: 54999
Number of successful extensions: 325
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)