Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F10
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.70 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   4.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 661 PPXPPPPPXPP 693
           PP P PPP PP
Sbjct: 338 PPKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 794  GGGXXXPPXXGEXXPPGXXXXXXXXGGXGXXGXXGGXGGGGG 669
            GGG    P   E   P         GG    G  GG GG GG
Sbjct: 1681 GGGPDKIPETAEDISPYATFQLSEGGGGSLAG-LGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 794  GGGXXXPPXXGEXXPPGXXXXXXXXGGXGXXGXXGGXGGGGG 669
            GGG    P   E   P         GG    G  GG GG GG
Sbjct: 1677 GGGPDKIPETAEDISPYATFQLSEGGGGSLAG-LGGLGGLGG 1717


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 661  PPXPPPPP 684
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 670  PPPPPXPP 693
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 212 EEFPPGLRSSADRAESQHQREDEAQNT 132
           +EFP    S  +R  S HQR   + NT
Sbjct: 102 KEFPNSSSSDDERPNSIHQRASFSLNT 128


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 373 IHN-YLQYCFKLNASLVLYHEVYFPKDF 293
           +HN +   CF  NA  V +HE+  P  +
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSIPNHY 111


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/22 (45%), Positives = 10/22 (45%), Gaps = 3/22 (13%)
 Frame = +1

Query: 661 PPXP---PPPPXPPXXPXXPXP 717
           PP P   PPP  PP  P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,805
Number of Sequences: 438
Number of extensions: 6723
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)