Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F08
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/36 (44%), Positives = 16/36 (44%)
 Frame = +1

Query: 574 PXLPPXGGPPPXXSXPPRGTXPXXXPLXPHXPPPXA 681
           P  P  GGPPP    PP G      P  P  PPP A
Sbjct: 753 PPAPIMGGPPP--PPPPPGVAGAGPP--PPPPPPPA 784


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +1

Query: 574  PXLPPXGGPPPXXSXPPRGTXPXXXPLXPHXPPP 675
            P +     PPP  S PP  + P      P  PPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 568  PXPXLPPXGGPPPXXSXPPRGTXPXXXPLXP 660
            P P  PP   PPP  S PP    P   P  P
Sbjct: 1705 PTPPPPPMSVPPP-PSAPPMPAGPPSAPPPP 1734


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/32 (46%), Positives = 15/32 (46%)
 Frame = +1

Query: 580 LPPXGGPPPXXSXPPRGTXPXXXPLXPHXPPP 675
           LPP   PPP    PP G  P   P  P  PPP
Sbjct: 4   LPPGNPPPPP---PPPGFEP---PSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +1

Query: 574 PXLPPXGGPPPXXSXPPRGTXPXXXPLXPHXPPPXA 681
           P LPP G      S PP  T P   P  P   PP A
Sbjct: 401 PALPPLGNAS-RTSTPPVPTPPSLPPSAPPSLPPSA 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,230
Number of Sequences: 5004
Number of extensions: 17713
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)