Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_F07
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical p... 31 1.1
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 7.7
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 28 7.7
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 28 7.7
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 28 7.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 28 7.7
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 7.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 7.7
U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (gr... 28 7.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 28 7.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 28 7.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 28 7.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.7
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 426 GGGXXXXGGGXXGGXXXPPPP 364
GGG GGG GG PPPP
Sbjct: 37 GGGGGCGGGGGCGGGCAPPPP 57
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 426 GGGXXXXGGGXXGGXXXPPPP 364
GGG GGG GG PPPP
Sbjct: 38 GGGGCGGGGGCGGGCAPPPPP 58
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 426 GGGXXXXGGGXXGGXXXPPPP 364
GGG GGG GG PPPP
Sbjct: 94 GGGGGCGGGGGCGGGCAPPPP 114
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 426 GGGXXXXGGGXXGGXXXPPPP 364
GGG GGG GG PPPP
Sbjct: 95 GGGGCGGGGGCGGGCAPPPPP 115
>Z77662-15|CAI79240.1| 255|Caenorhabditis elegans Hypothetical
protein F47B8.14 protein.
Length = 255
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 426 GGGXXXXGGGXXGGXXXPPPP 364
GGG GGG GG PPPP
Sbjct: 24 GGGGGYSGGGGGGGDAAPPPP 44
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 426 GGGXXXXGGGXXGGXXXPPPP 364
GGG GGG G PPPP
Sbjct: 25 GGGGYSGGGGGGGDAAPPPPP 45
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 365 GGGGXXXPPXXPPPXXXXPPP 427
GGGG P PPP PPP
Sbjct: 291 GGGGYSAPAAAPPPPPPPPPP 311
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 3.3
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +2
Query: 365 GGGGXXXPPXXPPPXXXXPPP 427
GGGG P PPP PPP
Sbjct: 291 GGGGYSAPAAAPPPPPPPPPP 311
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 350 PIISPPAPPPPPPPPPPPPP 369
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
protein K02E2.2 protein.
Length = 1021
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 779 PFFALPVPPPPPVPPPPPPP 798
>Z48367-5|CAE54886.1| 993|Caenorhabditis elegans Hypothetical
protein C33B4.3b protein.
Length = 993
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPPP 813
>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
protein C33B4.3a protein.
Length = 1110
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 794 PPPPPPLPPISSGAPPPPPP 813
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 303 PPGRTPGPPGMPGMPPPPPP 322
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 51 PAAGYPRPPIGYGAPPPPPP 70
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 51 PAAGYPRPPIGYGAPPPPPP 70
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 51 PAAGYPRPPIGYGAPPPPPP 70
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 52 PPQFCPPPPMCPPPPPPPPP 71
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 68 PPICPPPPPPPMPCPPPPPP 87
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 313 PPGRTPGPPGMPGMPPPPPP 332
>U00058-3|AAD31933.1| 162|Caenorhabditis elegans Ground-like (grd
related) protein22 protein.
Length = 162
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 37 PACAPPPPPMCGCAPPPPPP 56
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 284 PAGGSPPPPRAGSPPPPPPP 303
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 305 PAGGSPPPPRAGSPPPPPPP 324
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 290 PAGGSPPPPRAGSPPPPPPP 309
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 7.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 792 PXXXXPXPPXXXXXPPPPPP 851
P P PP PPPPPP
Sbjct: 576 PPPPPPPPPMLGGPPPPPPP 595
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.150 0.537
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,832,632
Number of Sequences: 27780
Number of extensions: 219185
Number of successful extensions: 1994
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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