Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F06
         (898 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    26   0.35 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.80 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.80 
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   5.7  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.7  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   7.5  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   7.5  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -3

Query: 233 STNPFCSWQQPRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPEVHHTNTSP 72
           ST P   W +P  +   DG + +QT  K    V + + + T     V  T   P
Sbjct: 405 STTPRPEWARPPSTPSADGSKPVQTTPKPGQWVPEKSTSTTQRTTTVSTTEAPP 458


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 131 RIQSHCVSRGSASVGRHLGRRW 196
           ++ + C  + SA++ + LGRRW
Sbjct: 496 KVVAECTLKESAAINQILGRRW 517


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 131 RIQSHCVSRGSASVGRHLGRRW 196
           ++ + C  + SA++ + LGRRW
Sbjct: 388 KVVAECTLKESAAINQILGRRW 409


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 362 RTCYNFYSI*IELKFQFNHY 303
           +T   F ++ +E +F FNHY
Sbjct: 11  QTYTRFQTLELEKEFHFNHY 30


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 362 RTCYNFYSI*IELKFQFNHY 303
           +T   F ++ +E +F FNHY
Sbjct: 162 QTYTRFQTLELEKEFHFNHY 181


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 362 RTCYNFYSI*IELKFQFNHY 303
           +T   F ++ +E +F FNHY
Sbjct: 221 QTYTRFQTLELEKEFHFNHY 240


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 16/72 (22%), Positives = 27/72 (37%)
 Frame = -3

Query: 347 FYSI*IELKFQFNHYAIIDXXXXXXXXXXXX*IGT*YRSTNPFCSWQQPRPSGDQDGGRR 168
           FYS  I   F +NH  +                     +T   C+    +P  +QD  RR
Sbjct: 90  FYSTPIVPHFAYNHNPLTPPNSEPLVSPKSEKEEKDMETTLTPCASPNRKPDDNQDHLRR 149

Query: 167 MQTHAKRNGTVS 132
           ++   +++G  S
Sbjct: 150 LEMSLEKSGLFS 161


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 98  PELNQCHFVPGRIQSHCVSRGSASVG 175
           P  + C F+   +  HC  + S+SVG
Sbjct: 61  PSADYCLFLEMTLAHHCRFKFSSSVG 86


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,824
Number of Sequences: 336
Number of extensions: 2736
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24927353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)