Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F06
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)              29   3.9  
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   29   3.9  
SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                29   3.9  

>SB_52170| Best HMM Match : zf-C3HC4 (HMM E-Value=7.4e-08)
          Length = 291

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 111 SAILCQVGYSPIAFRVGLH-PSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK* 269
           SAIL +V YS   +       S +ILVA G+ +L       +  W+C T SC  LF +  
Sbjct: 190 SAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQ 248

Query: 270 L*ILFQFVYYCIMVKL 317
           L + + F+   I+V L
Sbjct: 249 LDLQYLFMSPSILVAL 264


>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 20/80 (25%), Positives = 23/80 (28%)
 Frame = +1

Query: 448 PXPXXXXPXXXNXRGXGXPLXGGXXXPPXXKXTXGXXXPPPXXXGEKXSFFXXHXXXLXL 627
           P P    P   +      P+ G    PP      G   PPP   G   S           
Sbjct: 339 PPPSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGN------- 391

Query: 628 FXXPPXXPXKXPPPPXXXXP 687
              PP  P +  PPP    P
Sbjct: 392 -PPPPPPPGRGAPPPGPMIP 410


>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +3

Query: 111 SAILCQVGYSPIAFRVGLH-PSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK* 269
           SAIL +V YS   +       S +ILVA G+ +L       +  W+C T SC  LF +  
Sbjct: 128 SAILIRVSYSCRTWICSTSFMSPSILVAVGSAVLIHVALYSSRTWICSTYSCRLLF-YSQ 186

Query: 270 L*ILFQFVYYCIMVKL 317
           L + + F+   I+V L
Sbjct: 187 LDLQYLFMSPSILVAL 202



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 162 LHPSAAILVAAGAWLL------PATKWVCRTVSCTYLFSFK*L*ILFQFVYYCIMVKLEF 323
           L  S +ILVA G+ +L       +  W+C T SC  LF +  L + + F+   I+V L  
Sbjct: 213 LFMSPSILVAVGSAVLIHVAFYSSRTWICSTYSCRLLF-YSQLDLQYLFISPSILVALGS 271

Query: 324 QLYSY 338
           ++  Y
Sbjct: 272 EVIIY 276


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,552,055
Number of Sequences: 59808
Number of extensions: 337262
Number of successful extensions: 1212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)