Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F04
         (1386 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   1.8  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   4.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   4.1  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    23   4.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   4.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    23   4.1  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    23   4.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   4.1  

>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPPPXXQP 1292
            PP    Q  Q  + A  P H    T    TQ  P    P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQPQRLAP 83


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
            protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPP 1277
            PP    Q  Q  + A  P H    T    TQ  P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQP 78


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
            protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPP 1277
            PP    Q  Q  + A  P H    T    TQ  P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQP 78


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
            protein.
          Length = 230

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPP 1277
            PP    Q  Q  + A  P H    T    TQ  P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQP 78


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
            protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPP 1277
            PP    Q  Q  + A  P H    T    TQ  P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQP 78


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
            protein.
          Length = 297

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPP 1277
            PP    Q  Q  + A  P H    T    TQ  P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQP 78


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
            protein.
          Length = 157

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPP 1277
            PP    Q  Q  + A  P H    T    TQ  P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQP 78


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced Scr
            protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 1176 PPHTKSQXXQXTHXASXPAHXTXXTRXXXTQAPP 1277
            PP    Q  Q  + A  P H    T    TQ  P
Sbjct: 45   PPQVAPQYPQHPYAAPAPGHGLQPTMGDYTQLQP 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.314    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,658
Number of Sequences: 336
Number of extensions: 2315
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 41309922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)