Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F04
         (1386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.38 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    30   0.66 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.1  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +3

Query: 1227 PAHXTXXTRXXXTQAPPPXXQPXXPPXPPPPXXTRPRXXXXPPXHHXPPAXTP 1385
            PAH           A PP       P PPPP  + P     PP    PP+  P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSA---PTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 209  PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 247



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 222  PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 260



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 235  PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 273



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 248  PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 286



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 261  PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 299



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 274  PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 312



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 287  PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 325



 Score = 30.3 bits (65), Expect = 0.66
 Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRP-RXXXXPPXHHXPPAXTP 1385
            PPP         PPPP    P      PP HH P    P
Sbjct: 300  PPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMP 338


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
 Frame = +3

Query: 1173 PPPHTKSQXXQXTHXASXPAHXTXXTRXXX-TQAPPPXXQPXXPPXPPPPXXTR 1331
            PPP   +   Q T+ +  P               PPP   P  PP PP    TR
Sbjct: 239  PPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTR 292


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +3

Query: 1272 PPPXXQPXX-PPXPPPPXXTRPRXXXXP 1352
            PPP  +P   PP PPPP   + R    P
Sbjct: 14   PPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 27.1 bits (57), Expect = 6.1
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 1290 PXXPPXPPPPXXTRPRXXXXPP 1355
            P  PP PPPP    P     PP
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPPP 27


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = +3

Query: 1272 PPPXXQPXXPPXPPPPXXTRPRXXXXPPXHHXPPA 1376
            PPP      PP PPPP          PP    PPA
Sbjct: 752  PPPAPIMGGPPPPPPPPGVAGAGPPPPPP--PPPA 784


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 24/120 (20%), Positives = 33/120 (27%), Gaps = 2/120 (1%)
 Frame = +3

Query: 1032 TVXAPXPPCYXPXXXXXXXTPXATXPXXPPRXXXLTAXXA*XKXXDXPPPHTKSQXXQXT 1211
            ++ AP PP   P       +P  + P  P     +            PPP ++       
Sbjct: 247  SLSAPAPPPIPPPSNGTVSSPPNSPPR-PIAPVSMNPAINSTSKPPLPPPSSRVSAAALA 305

Query: 1212 HXASXPAHXTXXTRXXXTQAP--PPXXQPXXPPXPPPPXXTRPRXXXXPPXHHXPPAXTP 1385
                 P      +R    + P          PP PPPP          PP     P   P
Sbjct: 306  ANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,123
Number of Sequences: 5004
Number of extensions: 23190
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 767050708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)