Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F04
         (1386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   8.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   8.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   8.3  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +3

Query: 1251 RXXXTQAPPPXXQPXXPPXPPPPXXTRPRXXXXPPXHHXP 1370
            R   ++A P   +P   P P PP     R     P ++ P
Sbjct: 90   REAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRP 129


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 237 TPPXPPPXXXPPPXGLVGP 181
           TPP P P   PPP    GP
Sbjct: 337 TPPKPAP--PPPPPSSSGP 353


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 678  PSPPPXPPR 652
            P PPP PPR
Sbjct: 1857 PEPPPPPPR 1865


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 1263 TQAPPPXXQPXXPPXPPP 1316
            +Q PPP   P  PP   P
Sbjct: 43   SQGPPPGGPPGAPPSQNP 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.141    0.479 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,489
Number of Sequences: 438
Number of extensions: 5988
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 48145263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)