Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F02
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical ...    31   1.0  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine re...    29   5.5  
U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    28   9.5  

>AF016445-9|AAC69061.1|  156|Caenorhabditis elegans Hypothetical
           protein T05B4.13 protein.
          Length = 156

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 383 NSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFN--SSGLAS 258
           N+  +RTC   P+  TA+ S TAS S   STC ++N  SS L S
Sbjct: 87  NTYCQRTCGRCPSSTTASSSSTASSS---STCTSYNADSSSLCS 127


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 190 DPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMSLQ 312
           + EA A   R+ K +   ALL PDA PD  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 24 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 704 LETHFGATRTVAILGIIISKLCXXKVPPPR*FITYL 811
           L+  FGAT T+ +L III  L   K+   R FI +L
Sbjct: 52  LDVIFGATSTIYLLSIIIFNLNYLKLSDLRVFIFFL 87


>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
 Frame = -3

Query: 458 QGDGVQ--LSVXAPNP*TRVN-----VTGASGNSMSRRTCLDSPTFNTATGSFTASCSDM 300
           Q  G Q  L+  +PNP    +      +GA+ +S S  T + SP+ +++ GS   S S  
Sbjct: 502 QSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPA 561

Query: 299 ASTCI-TFNSSGLASGPNNA*RMTSLLL 219
           AST      S G    P ++   ++ +L
Sbjct: 562 ASTTSGEMTSQGSTQTPGSSVSTSAAIL 589


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
 Frame = -3

Query: 458 QGDGVQ--LSVXAPNP*TRVN-----VTGASGNSMSRRTCLDSPTFNTATGSFTASCSDM 300
           Q  G Q  L+  +PNP    +      +GA+ +S S  T + SP+ +++ GS   S S  
Sbjct: 709 QSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPA 768

Query: 299 ASTCI-TFNSSGLASGPNNA*RMTSLLL 219
           AST      S G    P ++   ++ +L
Sbjct: 769 ASTTSGEMTSQGSTQTPGSSVSTSAAIL 796


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
 Frame = -3

Query: 458 QGDGVQ--LSVXAPNP*TRVN-----VTGASGNSMSRRTCLDSPTFNTATGSFTASCSDM 300
           Q  G Q  L+  +PNP    +      +GA+ +S S  T + SP+ +++ GS   S S  
Sbjct: 709 QSSGAQSTLTTPSPNPSQSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPA 768

Query: 299 ASTCI-TFNSSGLASGPNNA*RMTSLLL 219
           AST      S G    P ++   ++ +L
Sbjct: 769 ASTTSGEMTSQGSTQTPGSSVSTSAAIL 796


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 389 SGNSMSRRTCLDSPTFNTATGSFTAS-CSDMASTCITFNSSGLAS 258
           S NS S  +  DS +  ++T S T + C D  STC ++ ++G  +
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFSTCTSWAANGFCT 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,645,341
Number of Sequences: 27780
Number of extensions: 312440
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)