Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_F01
(1377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 0.51
01_01_1130 + 8959909-8960396,8960588-8960638,8960736-8960827,896... 26 3.3
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 26 3.9
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 26 4.3
12_02_1174 - 26696869-26698191 26 4.5
08_02_1256 + 25645085-25645396 26 5.4
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 26 5.6
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 25 7.0
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862... 29 8.6
04_03_1022 - 21778315-21779007 29 8.6
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 29 8.6
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 29 8.6
01_01_0046 - 331758-332627 29 8.6
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 25.8 bits (54), Expect(2) = 0.51
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 5 PPPPXPXPPP 34
PPPP P PPP
Sbjct: 563 PPPPPPPPPP 572
Score = 25.8 bits (54), Expect(2) = 0.51
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPP 61
PPP P PPP PP
Sbjct: 602 PPPPPPPPPILPNRSVPP 619
Score = 25.8 bits (54), Expect(2) = 4.1
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPP 61
PPP P PPP PP
Sbjct: 618 PPPPPPPPPLPNHSVLPP 635
Score = 22.6 bits (46), Expect(2) = 4.1
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 5 PPPPXPXPPP 34
P PP P PPP
Sbjct: 600 PSPPPPPPPP 609
>01_01_1130 +
8959909-8960396,8960588-8960638,8960736-8960827,
8960964-8961054,8961877-8961937,8962172-8962216,
8962318-8962391,8962565-8962637,8963288-8963345,
8963398-8963468,8963801-8963837,8964040-8964128,
8964207-8964263,8964366-8964449,8964529-8964627,
8964765-8964869,8965145-8965216,8965308-8965497,
8965810-8966207
Length = 744
Score = 26.2 bits (55), Expect(2) = 3.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPPN 64
PPP P PPP PP+
Sbjct: 82 PPPPPPPPPTNGTLTPPPS 100
Score = 22.6 bits (46), Expect(2) = 3.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 5 PPPPXPXPPP 34
PPP P PPP
Sbjct: 75 PPPTPPSPPP 84
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 26.2 bits (55), Expect(2) = 3.9
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPPN 64
PPP P PPP PP+
Sbjct: 1931 PPPPPPPPPVEGKPKPPPH 1949
Score = 22.2 bits (45), Expect(2) = 3.9
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 5 PPPPXPXPPP 34
PPP P PPP
Sbjct: 1926 PPPHAPPPPP 1935
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 25.8 bits (54), Expect(2) = 4.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPP 61
PPP P PPP PP
Sbjct: 76 PPPPPPPPPPPPPVPVPP 93
Score = 22.6 bits (46), Expect(2) = 4.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 5 PPPPXPXPPP 34
P PP P PPP
Sbjct: 74 PSPPPPPPPP 83
>12_02_1174 - 26696869-26698191
Length = 440
Score = 25.8 bits (54), Expect(2) = 4.5
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 5 PPPPXPXPPP 34
PPPP P PPP
Sbjct: 153 PPPPPPPPPP 162
Score = 22.6 bits (46), Expect(2) = 4.5
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPP 61
PP P PPP PP
Sbjct: 187 PPSPPPPPPTRPPSVKPP 204
>08_02_1256 + 25645085-25645396
Length = 103
Score = 25.8 bits (54), Expect(2) = 5.4
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2
Query: 5 PPPPXPXPPP 34
PPPP P PPP
Sbjct: 66 PPPPLPSPPP 75
Score = 22.6 bits (46), Expect(2) = 5.4
Identities = 8/18 (44%), Positives = 8/18 (44%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPP 61
P P P PPP PP
Sbjct: 71 PSPPPPPPPQQQEEQSPP 88
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 25.8 bits (54), Expect(2) = 5.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPP 61
PPP P PPP PP
Sbjct: 106 PPPPPPPPPSPPPSAPPP 123
Score = 22.2 bits (45), Expect(2) = 5.6
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 5 PPPPXPXPPP 34
PPPP PPP
Sbjct: 56 PPPPPGPPPP 65
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 25.0 bits (52), Expect(2) = 7.0
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +2
Query: 8 PPPXPXPPPXXXXXXXPPN 64
P P P PPP PPN
Sbjct: 47 PSPAPPPPPHRPSPSPPPN 65
Score = 22.6 bits (46), Expect(2) = 7.0
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +2
Query: 5 PPPPXPXPPP 34
PPPP P P P
Sbjct: 40 PPPPSPVPSP 49
>10_08_0608 +
19184722-19185224,19185331-19185410,19186048-19186235,
19187021-19187927,19188015-19188142,19189270-19189356,
19189422-19189472,19189582-19189668,19189746-19189873,
19190469-19190608,19190721-19190882,19190964-19192733,
19192807-19192922,19193077-19193227,19193243-19193371,
19193598-19194139
Length = 1722
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 5 PPPPXPXPPPXXXXXXXPPN 64
PPPP P PPP PP+
Sbjct: 26 PPPPPPHPPPPPPLEPAPPS 45
>04_03_1022 - 21778315-21779007
Length = 230
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 5 PPPPXPXPPPXXXXXXXPPN 64
PPPP P PPP PP+
Sbjct: 37 PPPPPPPPPPYVPPHLLPPS 56
>03_02_0514 +
9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 29.1 bits (62), Expect = 8.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 66 PLGGXXXXXXXGGGXGXGGGG 4
PLGG GGG G GGGG
Sbjct: 98 PLGGGGGGWGAGGGGGGGGGG 118
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 5 PPPPXPXPPPXXXXXXXPPN 64
PPPP P PPP PP+
Sbjct: 90 PPPPSPPPPPPSSPPPVPPS 109
>01_01_0046 - 331758-332627
Length = 289
Score = 29.1 bits (62), Expect = 8.6
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 5 PPPPXPXPPPXXXXXXXPPN 64
PPPP P PPP PP+
Sbjct: 22 PPPPPPPPPPPSSSRYRPPS 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,149,142
Number of Sequences: 37544
Number of extensions: 281587
Number of successful extensions: 4187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3581
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4353229848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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