Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_F01
         (1377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    30   4.4  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    30   4.4  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    26   7.2  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    29   7.7  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    29   7.7  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -3

Query: 988 RGPPXPSNXYSXPPXXPXIXXXXXXXXXXXVXXPPXXXXFPPPPPXXVG 842
           RGPP P + Y  P   P                PP    FPPPPP  +G
Sbjct: 268 RGPP-PHHPYGPP--HPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMG 313


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 17/49 (34%), Positives = 19/49 (38%)
 Frame = -3

Query: 988 RGPPXPSNXYSXPPXXPXIXXXXXXXXXXXVXXPPXXXXFPPPPPXXVG 842
           RGPP P + Y  P   P                PP    FPPPPP  +G
Sbjct: 268 RGPP-PHHPYGPP--HPMHHPYAMMPPPFGFFPPPPRGHFPPPPPHFMG 313


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 25.8 bits (54), Expect(2) = 7.2
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 8   PPPXPXPPPXXXXXXXPP 61
           PPP P PPP       PP
Sbjct: 63  PPPPPPPPPPMCPPPPPP 80



 Score = 21.8 bits (44), Expect(2) = 7.2
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 5  PPPPXPXPPP 34
          PPPP   PPP
Sbjct: 33 PPPPMCAPPP 42


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
          protein R144.4a protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 5  PPPPXPXPPPXXXXXXXPPN 64
          PPPP P PPP       PP+
Sbjct: 6  PPPPPPPPPPPPAASAPPPS 25


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
          protein R144.4b protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 5  PPPPXPXPPPXXXXXXXPPN 64
          PPPP P PPP       PP+
Sbjct: 6  PPPPPPPPPPPPAASAPPPS 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,863,562
Number of Sequences: 27780
Number of extensions: 155115
Number of successful extensions: 1218
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3892097572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)