Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_E23
(937 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.39
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.2
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.2
AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical ... 30 2.7
AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical ... 30 2.7
U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical pr... 29 3.6
U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protei... 29 4.8
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.8
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.8
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.8
AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen prot... 28 8.3
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +3
Query: 759 PGXCVPPTPPXXXPNPL-XPXSR*LPXLDXPPPXXTPXLXPP 881
P C PP PP P PL P P PPP P PP
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPP 68
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +3
Query: 750 PXXPGXCVPPTPPXXXPNPLXPXS--R*LPXLDXPPPXXTPXLXPP 881
P P C PP P P P+ P P PPP P + PP
Sbjct: 32 PPPPPMCAPPPLPCPPP-PICPPQFCPPPPMCPPPPPPPPPPMCPP 76
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 747 SPXXPGXCVPPTPPX-XXPNPLXPXSR*LPXLDXPPPXXTPXLXPPLGXXP 896
SP P PP PP P P S P PPP P PP G P
Sbjct: 263 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 313
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 747 SPXXPGXCVPPTPPX-XXPNPLXPXSR*LPXLDXPPPXXTPXLXPPLGXXP 896
SP P PP PP P P S P PPP P PP G P
Sbjct: 284 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 334
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/51 (37%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 747 SPXXPGXCVPPTPPX-XXPNPLXPXSR*LPXLDXPPPXXTPXLXPPLGXXP 896
SP P PP PP P P S P PPP P PP G P
Sbjct: 269 SPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLP 319
>AF025451-4|AAL16306.1| 567|Caenorhabditis elegans Hypothetical
protein C24H12.4b protein.
Length = 567
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 530 SVDFCDARQGGXSLWKNAQQRXLFTVPGLLLAFCS 426
+++ CD + S+W + + T PG LL CS
Sbjct: 128 AINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 162
>AF025451-3|AAB71200.2| 634|Caenorhabditis elegans Hypothetical
protein C24H12.4a protein.
Length = 634
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 530 SVDFCDARQGGXSLWKNAQQRXLFTVPGLLLAFCS 426
+++ CD + S+W + + T PG LL CS
Sbjct: 195 AINLCDINEEENSVWLEDRSHVVVTTPGKLLRMCS 229
>U23147-2|AAC46688.1| 918|Caenorhabditis elegans Hypothetical
protein C18H9.3 protein.
Length = 918
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = -1
Query: 937 PKKSXGXXXSXXAXGXXPRGGXRXGVXXGGGXSRXGSYRXXGXKGFG 797
PK S G PRGG G G + G R G GFG
Sbjct: 103 PKSSWNKGTPDRGTGTTPRGGGSVGRASGAFFAGRGGGRIGGENGFG 149
>U53333-6|AAA96159.2| 304|Caenorhabditis elegans Collagen protein
33 protein.
Length = 304
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Frame = +2
Query: 770 CSP-HPPXXXPEPLXPXXPVTTXXXXXXXXXNPXPXXPPGXXPPGXXGXPXP 922
C P PP P P P P N P P G PPG G P
Sbjct: 142 CEPITPPPCKPCPDGPAGPPGPPGAPGDAGTNGAPGAPGGDAPPGEAGPKGP 193
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 776 PHPPXXXPEPLXPXXPVTTXXXXXXXXXNPXPXXPPGXXPPGXXGXPXP 922
P PP P P P P PPG PP G P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 776 PHPPXXXPEPLXPXXPVTTXXXXXXXXXNPXPXXPPGXXPPGXXGXPXP 922
P PP P P P P PPG PP G P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 761
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 776 PHPPXXXPEPLXPXXPVTTXXXXXXXXXNPXPXXPPGXXPPGXXGXPXP 922
P PP P P P P PPG PP G P P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPP 344
>AF099925-3|AAC69507.1| 394|Caenorhabditis elegans Collagen protein
69 protein.
Length = 394
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +3
Query: 750 PXXPGXCVPPTPPXXXPNPLXP 815
P PG C PP PP P P P
Sbjct: 260 PGLPGQCGPPGPPGYTPPPGPP 281
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,413,523
Number of Sequences: 27780
Number of extensions: 325219
Number of successful extensions: 1120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2412704140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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