Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_E22
(874 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 31 0.91
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275... 30 2.8
08_02_1438 + 27108359-27108889 29 3.7
06_03_0572 + 22388682-22389032 29 3.7
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 29 3.7
07_03_1148 - 24363952-24365086,24365178-24365361,24365438-243654... 29 4.9
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 29 6.4
10_01_0271 - 2881059-2881409 28 8.5
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166 28 8.5
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 31.5 bits (68), Expect = 0.91
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 301 VAVVEVGGP--DGAEHVLVVAGERDLQGGPGGSVRV 200
VA V GGP DGA+ V+ V L G P GS RV
Sbjct: 91 VAYVTTGGPIPDGADAVVQVEDTEQLAGAPDGSKRV 126
>07_01_0370 +
2749353-2749786,2749949-2750346,2750435-2750519,
2751200-2751314,2751538-2751591
Length = 361
Score = 29.9 bits (64), Expect = 2.8
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 313 SAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSP-RTCRH 158
+A L + V + G A V++ AG R GG GG V VH AA SP T RH
Sbjct: 3 AARLASTV-LAGRRRAASVVIAAGPR--YGGGGGGVHVHPWAAFPSPTATTRH 52
>08_02_1438 + 27108359-27108889
Length = 176
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 319 GGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRV 200
GG E V VE DGA +L V E+++ GG VRV
Sbjct: 79 GGVREAVRCVEYVDDDGAVLLLTVTTEKEVAVVDGGEVRV 118
>06_03_0572 + 22388682-22389032
Length = 116
Score = 29.5 bits (63), Expect = 3.7
Identities = 26/59 (44%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Frame = -1
Query: 355 PCPFTLSRASPCGGSAEL---VAVVEVGGPDGAEH----VLVVAGERDLQGG-PGGSVR 203
P P L+ A GGS EL V V E GG DGA H + AGE + GG P G R
Sbjct: 3 PSPSILTDA---GGSPELGSGVKVAEDGGGDGAVHGEEDKAITAGEAEGAGGRPKGGAR 58
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 29.5 bits (63), Expect = 3.7
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = -2
Query: 291 LKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACLRARVGTCLPLAKHAHNNNNAT 112
L++ MA+ ++L G R A + KLP+ V +PL + N++++
Sbjct: 213 LRAGALMAVLSYLDFFSTGVQRVALSTAANICRKLPSDASEFVMEAVPLLTNLLNHHDSK 272
Query: 111 LFEHLDLC 88
+ EH +C
Sbjct: 273 VLEHASVC 280
>07_03_1148 -
24363952-24365086,24365178-24365361,24365438-24365474,
24365585-24365818
Length = 529
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -1
Query: 331 ASPCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSV 206
A+PCGG E + +GG D V+++ GE L GPGG +
Sbjct: 452 AAPCGGRREEYHLSPLGG-DIRSQVVLLNGEA-LALGPGGEI 491
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 28.7 bits (61), Expect = 6.4
Identities = 24/58 (41%), Positives = 28/58 (48%)
Frame = -1
Query: 370 PVRLSPCPFTLSRASPCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVH 197
P RL P PF LS +SP G + LVA A V AG + GG GGS +H
Sbjct: 19 PSRL-PRPFLLSLSSPSRGGSGLVA---------ASASAVAAGGSEGDGGIGGSHGLH 66
>10_01_0271 - 2881059-2881409
Length = 116
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -1
Query: 349 PFTLSRASPCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSPR 170
P L + C V+E G PD A VL A + GG GGS R +A +PR
Sbjct: 34 PQELHQHHACASWTTKTTVIETGPPDLAVAVLGTARCLAISGG-GGSPRRWLPSATTAPR 92
>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
Length = 545
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 211 SVRVHCEAAGLSPRTCRHVST 149
S+R+HC A L+PR CR T
Sbjct: 401 SLRLHCPAPLLAPRKCRETCT 421
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,374,073
Number of Sequences: 37544
Number of extensions: 377341
Number of successful extensions: 1274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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