Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E21
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.37 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    28   2.0  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   2.6  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   8.0  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
 Frame = +3

Query: 198  VRAPPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLS--SAESPKLP 371
            V  P  A P+P   V +P  P    +  +P  +        P    P +   S+E+P + 
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVS 1250

Query: 372  NPESWCPNPES-WCPNPES 425
             P S  P+P S   P+P S
Sbjct: 1251 TPRSSVPSPHSNASPSPTS 1269


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 207  PPMAVPIPPNEVAMPSRPFSILSSSIPWSA 296
            PPM+VP PP+   MP+ P S     +P S+
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASS 1739


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
 Frame = +3

Query: 183 FAIFEVRAPPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPK-LSSAES 359
           F  F  R P      P N  ++PS P    SSS P  + +  + +  +  +P  L S++ 
Sbjct: 98  FKNFPFRPPTRLTSTPSNSSSLPSIP---SSSSTPSISSIPHTTSSVSNDIPSVLGSSDH 154

Query: 360 P-KLPNPESWCPNPESWCPNPE-SWCPNPGVMVSKSGVMPEATES 488
           P  L NPE   P P S+    + S  P P +    S  +P  T S
Sbjct: 155 PIDLDNPEHLTP-PSSFITAKQLSRLPTP-LPPPSSSSLPTGTIS 197


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 210 PMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAESPKLPNPESWC 389
           P + P PP  + + S+P S  SS++P   K    F+  + S    ++++ P+  + ES  
Sbjct: 193 PYSSPFPPPRIVLGSKPVS--SSTLPSKPKSFQVFSDASSSRDSQNASDLPQAKSLESEA 250

Query: 390 PNP 398
             P
Sbjct: 251 NTP 253


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 312 FTCP--ALSLPKLSSA--ESPKLPNPESWCPNPESWCPN 416
           +T P  A+ +P L  A  +S   P PE++  NP+ W PN
Sbjct: 403 YTVPKDAMVIPTLYGALHDSKVYPEPETF--NPDRWAPN 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,294
Number of Sequences: 5004
Number of extensions: 45605
Number of successful extensions: 144
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)