Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E19
         (1054 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.36 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   2.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.5  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 875  PPXXPXXPXXFPXXXXPPLPPXSTXXSPXSPRPXXXAPP 759
            PP     P   P    PP+PP ST  +P  P P    PP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPST--APPVPTPSAGLPP 1228



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 878  PPPXXPXXPXXFPXXXXPPLPPXSTXXSPXSPRPXXXAPP 759
            P P     P   P    PP+PP S   +P  P+P    PP
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPS--EAPPVPKPSVGVPP 1209



 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/45 (26%), Positives = 15/45 (33%)
 Frame = -1

Query: 817  PPXPLXXXLXPPAPXRPRXPPXXXXAXPFXPLXXPXGAVXPXXXP 683
            PP P      PP P     PP    +    P+  P   + P   P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKP 1184



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -1

Query: 817  PPXPLXXXLXPPAPXRPRXPPXXXXAXPFXPLXXPXGA 704
            PP P      PP P     PP    +    P+  P GA
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/38 (31%), Positives = 14/38 (36%)
 Frame = -1

Query: 817  PPXPLXXXLXPPAPXRPRXPPXXXXAXPFXPLXXPXGA 704
            PP P      PP P     PP    +    P+  P GA
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGA 1158


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -3

Query: 878  PPPXXPXXPXXFPXXXXPPLPPXSTXXSPXSPRP 777
            PPP  P  P   P    PPLP  S   +P  P P
Sbjct: 1716 PPPSAPPMPAGPPSAPPPPLPASS---APSVPNP 1746


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/42 (35%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
 Frame = -3

Query: 878  PPPXXPXXPXXFPXXXXPPLPPXSTXXSPXS-PRPXXXAPPP 756
            PP      P        P LPP S+   P S  RP    PPP
Sbjct: 1035 PPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPP 1076


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 17/63 (26%), Positives = 21/63 (33%)
 Frame = -2

Query: 867 PXXXPXPLPXXXXPPFTPXXHXXXXXFPPPPXXRAXPPXXPXXXLSXPSXRPXAPXXXXL 688
           P   P  +P    P   P  +      PP P   + PP  P      PS  P AP    +
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP------PSLPPSAPPSLPM 441

Query: 687 XRP 679
             P
Sbjct: 442 GAP 444



 Score = 26.2 bits (55), Expect = 7.7
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = -1

Query: 826 PLYPPXPLXXXLXPPAPXRPRXPPXXXXAXPFXPL 722
           P+ PP P      PP P     PP      P  P+
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPV 488


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +3

Query: 723 RGXKGXAXXXXGGXRG-RXGAGGXRXXX--SGXGG*RGG 830
           RG +G +    GG  G R G GG R      G GG RGG
Sbjct: 8   RGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/52 (26%), Positives = 16/52 (30%)
 Frame = -3

Query: 878 PPPXXPXXPXXFPXXXXPPLPPXSTXXSPXSPRPXXXAPPPXXXXXXXFXAP 723
           P P     P   P    PP PP     +   P P    PP        + AP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,485
Number of Sequences: 5004
Number of extensions: 12848
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 553220522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)