Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_E15
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 39 0.001
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.014
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.52
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.6
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 4.9
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.4
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 6.4
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 8.5
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +3
Query: 687 PPPPRXPXFXXFFXXPPPPPPXKXXKXKHXXPXLSG 794
PPPP P F PPPPPP K K+ P SG
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +2
Query: 773 PXPPPFXGAXXPPPXXNXQXXPPPPP 850
P PPP PPP PPPPP
Sbjct: 9 PPPPP------PPPGFEPPSQPPPPP 28
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.014
Identities = 21/67 (31%), Positives = 22/67 (32%)
Frame = +3
Query: 651 PPPPXVXXSXXNPPPPRXPXFXXFFXXPPPPPPXKXXKXKHXXPXLSGVPXPPPXXXTXX 830
PPPP V P P P PPPPPP P P PPP +
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP-----PPPPPPAVSAG 788
Query: 831 XXRRXPP 851
R P
Sbjct: 789 GSRYYAP 795
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/39 (38%), Positives = 15/39 (38%)
Frame = +3
Query: 633 PXXQXXPPPPXVXXSXXNPPPPRXPXFXXFFXXPPPPPP 749
P P PP PPPP P PPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 33.5 bits (73), Expect = 0.042
Identities = 23/75 (30%), Positives = 25/75 (33%)
Frame = +1
Query: 655 PPPXXXXLXXTPPPPAXPVFXXFXXXLXPPPXAKXXKXNTXPPXFXGCXXPPPXXXPPXP 834
PPP + TP P PV PPP PP G PPP PP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP-------PPGVAGAGPPPP---PPPP 782
Query: 835 AAAXPQXKKXXXPXP 879
A + P P
Sbjct: 783 PAVSAGGSRYYAPAP 797
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 734 SXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLP 880
S PPP TP P P P PPPPP A P P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP-PPPPPGVAGAGPPPP 778
Score = 29.1 bits (62), Expect = 0.91
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +2
Query: 752 QKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLPFXGXXG 898
QK K+P PPP P P PPP P P P G G
Sbjct: 725 QKLLLKSPPPPP-PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = +1
Query: 610 PXXPVPXPXXXKXXXPPPXXXXLXXTPPPPAXPVFXXFXXXLXPPPXA 753
P VP P PPP PPPP V PPP A
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLPFXG 889
PS PP K P P P + PP PP PP + P P G
Sbjct: 1155 PSGAPPVPKPSVAAP-PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVG 1206
Score = 29.1 bits (62), Expect = 0.91
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPX------PPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLP 880
PS PPP + P PP PP PP PK A P+P
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVP 1115
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLP 880
PS PP K P PP P P + P P P K P P
Sbjct: 1194 PSEAPPVPKPSVGVPPVPP-PSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLPFXG 889
PS PP K P P GA P P + P P P P P G
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAP-PVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/50 (34%), Positives = 19/50 (38%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLP 880
PS PP K P P A P P + PP PK A P+P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS---GAPPVPKPSVAAPPVP 1134
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +2
Query: 740 PPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLPFXG 889
PP + P PPP P P PP PP P P G
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGV---PPVPPPSTAPPVPTPSAG 1225
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.9 bits (64), Expect = 0.52
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXA 871
P PPP P PP A PPP + PP + A
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Score = 29.1 bits (62), Expect = 0.91
Identities = 19/63 (30%), Positives = 19/63 (30%), Gaps = 2/63 (3%)
Frame = +3
Query: 630 PPXXQXXPPPPXVXXSXXNPPPPRXPXFXXFFXXPP--PPPPXKXXKXKHXXPXLSGVPX 803
PP PP V PPP P PP PP P S P
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPL 292
Query: 804 PPP 812
PPP
Sbjct: 293 PPP 295
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPX---------PPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLP 880
P PPP ++ K P PPP PPP N P PP+ + A P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPP-----PPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLP 880
PS PP + P GA PP PP P A PLP
Sbjct: 421 PSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Score = 27.5 bits (58), Expect = 2.8
Identities = 28/137 (20%), Positives = 32/137 (23%)
Frame = +2
Query: 470 PPPPXXXXXFXPPXXLXHXPATXXPGNGPXAAWXXXXXPGGXXPXFXXXPRXPTPXXXXN 649
PPPP PP ++ P P + P P P
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373
Query: 650 XXPPPXXXXSXXXXXXXXAXFXXFFXXPSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQ 829
PPP P+ PP TP P P
Sbjct: 374 RQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPP 433
Query: 830 XXPPPPPKXKXAXAPLP 880
PP P A PLP
Sbjct: 434 SAPPSLPMGAPAAPPLP 450
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 767 KTPXPPPFXGAXXPPPXXNXQXXPPPPP 850
K P PPP N + PPPPP
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPP 316
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQXXPPPPPKXKXAXAPLP 880
PS PP P PP A PP PP P A P P
Sbjct: 433 PSAPPSLPMGAPAAPPLPP--SAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Frame = +2
Query: 731 PSXPPPXQKXXXKTPXPPPFXGAXXPPPXXNXQ--XXPPPPPKXKXAXAPLP 880
PS PPP P P + PPP PP P A P+P
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 26.6 bits (56), Expect = 4.9
Identities = 23/91 (25%), Positives = 24/91 (26%), Gaps = 13/91 (14%)
Frame = +3
Query: 618 PGXXPPXXQXXPPPPXVXXSXXNPPPPRXPXFXXFFXXPP---------PPPPXKXXKXK 770
P P PPP PPPP PP PPPP +
Sbjct: 198 PAHHEPGEHMPPPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGE 257
Query: 771 HXXP----XLSGVPXPPPXXXTXXXXRRXPP 851
H P G PPP PP
Sbjct: 258 HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPP 288
Score = 26.6 bits (56), Expect = 4.9
Identities = 33/134 (24%), Positives = 35/134 (26%), Gaps = 4/134 (2%)
Frame = +3
Query: 471 PPPPXXXXXFXXPXPXXTXQQPNXXETAPXRPGXXXXXPGAXXLXXTXXPGXXPPXXQXX 650
PPPP P +P E P P PG P P
Sbjct: 221 PPPPMHHEPGEHMPPPPMHHEPG--EHMPPPP--MHHEPGEHM---PPPPMHHEPGEHMP 273
Query: 651 PPPPXVXXSXXNPPPPRXPXFXXFFXXPPPPPPXKXXKXKHXXP----XLSGVPXPPPXX 818
PPP PPPP PPPP +H P G PPP
Sbjct: 274 PPPMHHEPGEHMPPPPMHHEPGEHM----PPPPMHHEPGEHMPPPPMHHEPGEHMPPPPM 329
Query: 819 XTXXXXRRXPPKXK 860
PP K
Sbjct: 330 HHEPGEHMPPPPFK 343
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +2
Query: 770 TPXPPPFXGAXXP--PPXXNXQXXPPPPPKXKXAXAPLPFXG 889
TP PPP P PP PPPP + +P G
Sbjct: 1706 TPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 25.8 bits (54), Expect = 8.5
Identities = 24/80 (30%), Positives = 27/80 (33%)
Frame = +1
Query: 610 PXXPVPXPXXXKXXXPPPXXXXLXXTPPPPAXPVFXXFXXXLXPPPXAKXXKXNTXPPXF 789
P PV P PP PPP + P PPP A PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVP----------PPPSA--------PPMP 1724
Query: 790 XGCXXPPPXXXPPXPAAAXP 849
G PP PP PA++ P
Sbjct: 1725 AG---PPSAPPPPLPASSAP 1741
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = -1
Query: 745 GGGGGXXKKXXKXGXRGGGGFXXXXXTXGGGGIXXXXGGXXPGXXVKXRXXAPGXXXXXP 566
GG GG + G GG G G GG GG G + PG P
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF--GGGLGGFGGGPGGFGGGP 265
Query: 565 GRXG 554
G G
Sbjct: 266 GGHG 269
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = -2
Query: 807 GXXAPXKGGGXGVXFXXFCXGGGXEGXXKXXKNXAXGGGGGXGEXXXXGGG 655
G +GG G GGG G + A GG GG G GG
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGG 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,869,000
Number of Sequences: 5004
Number of extensions: 31025
Number of successful extensions: 296
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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