Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP07_F_E14
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.017
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 29 0.83
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 2.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.4
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.4
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 26 5.8
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.017
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +1
Query: 658 PPPPXPXXPPXPXXXXVPGPXXXPFSEGXXGPPXLXXLPRXGLXPPP 798
PPPP P P +P P P G PP + G PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 29.1 bits (62), Expect = 0.83
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -1
Query: 380 GLLVVPFASCRSIHLL*QLPFYRRYHRLLESNXXXXHPYRLQIQVRLHTFYNQIILNP 207
G+L+ PF + S+++ + R HR L S L+ + L Y+Q+ L P
Sbjct: 23 GILIPPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLPLREHLPLKNVYSQVPLLP 80
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 359 QKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEXMSDIEXP 487
+KE+L N++ L+K++ E + +AIR + +SD P
Sbjct: 571 EKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQP 613
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/52 (28%), Positives = 16/52 (30%)
Frame = +2
Query: 644 PPPXXXPPPXPXPPXXPPXXXSRGXGXPXLARGXLGPPXFXXXXGXVWXPPP 799
P P PP P P P G P + PP G PPP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +2
Query: 644 PPPXXXPPPXPXPPXXPPXXXSRGXGXPXLARGXLGPPXFXXXXGXVWXPPP 799
P P PP P P PP P A PP G PPP
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/67 (25%), Positives = 22/67 (32%)
Frame = +2
Query: 611 LPFQNTXLSNYPPPXXXPPPXPXPPXXPPXXXSRGXGXPXLARGXLGPPXFXXXXGXVWX 790
+P ++ + P P PP P P PP G P + PP G
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPPSEAPP-VPKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229
Query: 791 PPPLXPA 811
P P A
Sbjct: 1230 PVPTAKA 1236
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +3
Query: 645 PXPXXXPPPPXXPPXP 692
P P PPPP PP P
Sbjct: 1709 PPPMSVPPPPSAPPMP 1724
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 578 VNSPAFIFSSLLPFQNTXLSNYPPPXXXPPPXPXPP 685
V++P S P Q + + PPP PPP PP
Sbjct: 1687 VSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPP 1722
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 650 PXXXPPPXPXPPXXPP 697
P PPP P PP PP
Sbjct: 802 PFKAPPPAPLPPPAPP 817
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +2
Query: 644 PPPXXXPPPXPXPPXXPPXXXSRGXGXP 727
PPP PP P PP P R P
Sbjct: 14 PPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 640 LPPXXXPPPPXPXXPPXPXXXXVPGP 717
LPP PPPP P P P P
Sbjct: 4 LPPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 644 PPPXXXPPPXPXPPXXPP 697
PPP PP PP PP
Sbjct: 13 PPPPGFEPPSQPPPPPPP 30
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 392 LNKEIAFHQEQIKRHEDAIRRHKEXMSDI 478
+N+E F E+ KR +D+ R+H +S I
Sbjct: 324 INREQFFADEEAKRFKDSFRKHFRDISRI 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,582
Number of Sequences: 5004
Number of extensions: 50699
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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