Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E14
         (845 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 593 FIFSSLLPFQNTXLSNYPPPXXXPPPXPXPPXXPP 697
           F+F +L+ +    L N        PP P PP  PP
Sbjct: 317 FVFMALMEY---CLVNIVLGDSDTPPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 643 PPXXXPPPPXP 675
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 356 KQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEXMSD 475
           K K  + +L+    K  A H+EQ+ R +  +RR  E +++
Sbjct: 92  KAKRFIKSLEERERKH-AVHKEQLSREQRFLRRRLEQLTN 130


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/47 (25%), Positives = 14/47 (29%)
 Frame = +1

Query: 664  PPXPXXPPXPXXXXVPGPXXXPFSEGXXGPPXLXXLPRXGLXPPPXL 804
            P      P      +PGP          G P L   P     PPP +
Sbjct: 1124 PQLKPQKPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPFNFWNPPPFM 1170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,484
Number of Sequences: 438
Number of extensions: 6597
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)