Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E13
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   3.4  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   3.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   3.4  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   7.9  

>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/50 (28%), Positives = 19/50 (38%)
 Frame = -2

Query: 591 WNGFLXGLXSWEXGRGGQFPSXPXGSANSXPGINESSXGLVXFXQKVIFF 442
           W G      +W+ GR  +  S      NS   + E   GL    Q  I+F
Sbjct: 77  WKGLFRRQSNWKDGRCKKVESMLPQLLNSEKSVGEDRLGLTLTHQNNIYF 126


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 563 LGXWXGEVNFHRXHXVQPTAXRELMKAVXAWXDSXRRLYFSGS 435
           L  +   V  HR   V+P    + ++ +  W ++   ++FSGS
Sbjct: 289 LNDYFDSVFVHRYRDVEPKIRVDCLQELGVWINTVPSIFFSGS 331


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -3

Query: 275 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 159
           S+   GC +TE+    T+ C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 542 PPLPXSQEXNPNKNPFQPGGSPLGMXIKK 628
           PP P + + NP+ +P  P   P+   +K+
Sbjct: 317 PPAPSTLQFNPSPSPAAPSYPPVDASVKQ 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,297
Number of Sequences: 5004
Number of extensions: 45222
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)