Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E09
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   2.7  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   6.3  

>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +3

Query: 789 PXP*XXPPXPRXKXXFCFXGAPXPXXPXPXNPXP 890
           P P   PP P       +   P P  P P +P P
Sbjct: 576 PSPLSLPPEPLLSPTIDYSATPFPLEPPPESPGP 609


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 193 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGPTLLQAY 330
           +E +D  PY++N P+     G   E     A    R QGP+LL+ Y
Sbjct: 734 HEIVDEEPYLLNDPEKELELGCTLE----SALKRARAQGPSLLEDY 775


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,926
Number of Sequences: 5004
Number of extensions: 51727
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)