Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP07_F_E08
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   201   9e-53
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   200   3e-52
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    29   1.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  201 bits (491), Expect = 9e-53
 Identities = 101/192 (52%), Positives = 124/192 (64%)
 Frame = +1

Query: 124 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 303
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 304 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 483
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 484 PGTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYPCNTKSSHSIGLMWWLLAREVLXLR 663
           P         +                        P N K   SIGL W+LLAREVL LR
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189

Query: 664 GVLPRDQRWDVV 699
           G + R   W+V+
Sbjct: 190 GNISRTTAWEVM 201



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +2

Query: 494 DHQPITEASYVNIPVIALCNTDSPLRFVDIAI 589
           D Q I EAS+VNIPVIALC+TDS L  VD+AI
Sbjct: 133 DAQAIKEASFVNIPVIALCDTDSILNHVDVAI 164


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  200 bits (487), Expect = 3e-52
 Identities = 97/196 (49%), Positives = 126/196 (64%)
 Frame = +1

Query: 112 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 291
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 292 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 471
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 472 IVLDPGTRPSTHY*SFICQHSCDCFVQHRLPTKICGHCYPCNTKSSHSIGLMWWLLAREV 651
           +V DP         +                        P N K   SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184

Query: 652 LXLRGVLPRDQRWDVV 699
           L +RG L R   WDV+
Sbjct: 185 LRVRGTLSRSAPWDVM 200



 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 24/32 (75%), Positives = 26/32 (81%)
 Frame = +2

Query: 494 DHQPITEASYVNIPVIALCNTDSPLRFVDIAI 589
           D Q I EAS+VNIPVIALC+TDS L  VDIAI
Sbjct: 132 DAQAIKEASFVNIPVIALCDTDSILNHVDIAI 163


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = +1

Query: 247 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 423
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,412,212
Number of Sequences: 5004
Number of extensions: 73727
Number of successful extensions: 179
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)